Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17340

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS17335 and LU632_RS17340 are separated by 262 nucleotidesLU632_RS17340 and LU632_RS17345 are separated by 24 nucleotides LU632_RS17335: LU632_RS17335 - IS6 family transposase, at 3,258,822 to 3,259,526 _RS17335 LU632_RS17340: LU632_RS17340 - hypothetical protein, at 3,259,789 to 3,260,031 _RS17340 LU632_RS17345: LU632_RS17345 - TraI domain-containing protein, at 3,260,056 to 3,261,564 _RS17345 Position (kb) 3259 3260 3261Strain fitness (log2 ratio) -1 0 1at 3259.597 kb on - strandat 3259.597 kb on - strandat 3259.944 kb on + strand, within LU632_RS17340at 3259.944 kb on + strand, within LU632_RS17340at 3259.944 kb on + strand, within LU632_RS17340at 3259.946 kb on + strand, within LU632_RS17340at 3259.946 kb on + strand, within LU632_RS17340at 3259.946 kb on + strand, within LU632_RS17340at 3259.946 kb on + strand, within LU632_RS17340at 3259.946 kb on + strand, within LU632_RS17340at 3260.037 kb on - strandat 3260.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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3,259,597 - -0.5
3,259,597 - -0.5
3,259,944 + LU632_RS17340 0.64 -0.0
3,259,944 + LU632_RS17340 0.64 -0.2
3,259,944 + LU632_RS17340 0.64 +0.5
3,259,946 + LU632_RS17340 0.65 -0.0
3,259,946 + LU632_RS17340 0.65 -0.8
3,259,946 + LU632_RS17340 0.65 +0.0
3,259,946 + LU632_RS17340 0.65 -0.1
3,259,946 + LU632_RS17340 0.65 +0.8
3,260,037 - +0.3
3,260,037 - -1.2

Or see this region's nucleotide sequence