Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14655

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlolE and lolD overlap by 1 nucleotideslolD and lolC overlap by 8 nucleotideslolC and LU632_RS14660 are separated by 357 nucleotides LU632_RS14645: lolE - lipoprotein-releasing ABC transporter permease subunit LolE, at 2,785,317 to 2,786,561 lolE LU632_RS14650: lolD - lipoprotein-releasing ABC transporter ATP-binding protein LolD, at 2,786,561 to 2,787,265 lolD LU632_RS14655: lolC - lipoprotein-releasing ABC transporter permease subunit LolC, at 2,787,258 to 2,788,457 lolC LU632_RS14660: LU632_RS14660 - IS5 family transposase, at 2,788,815 to 2,789,659 _RS14660 Position (kb) 2787 2788 2789Strain fitness (log2 ratio) -1 0 1at 2787.266 kb on - strandat 2788.481 kb on - strandat 2788.541 kb on - strandat 2788.624 kb on + strandat 2788.624 kb on + strandat 2788.625 kb on - strandat 2788.690 kb on + strandat 2788.690 kb on + strandat 2788.691 kb on - strandat 2788.691 kb on - strandat 2788.889 kb on + strandat 2788.948 kb on - strand, within LU632_RS14660

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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2,787,266 - -1.6
2,788,481 - +0.0
2,788,541 - +0.4
2,788,624 + -0.0
2,788,624 + +0.5
2,788,625 - +0.8
2,788,690 + +0.8
2,788,690 + -0.5
2,788,691 - +0.1
2,788,691 - +0.2
2,788,889 + -0.0
2,788,948 - LU632_RS14660 0.16 -0.6

Or see this region's nucleotide sequence