Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14240

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS14225 and LU632_RS14230 overlap by 4 nucleotidesLU632_RS14230 and LU632_RS14235 are separated by 60 nucleotidesLU632_RS14235 and LU632_RS14240 overlap by 4 nucleotidesLU632_RS14240 and LU632_RS14245 are separated by 18 nucleotidesLU632_RS14245 and LU632_RS14250 are separated by 111 nucleotidesLU632_RS14250 and LU632_RS14255 are separated by 102 nucleotides LU632_RS14225: LU632_RS14225 - replication protein P, at 2,726,867 to 2,727,628 _RS14225 LU632_RS14230: LU632_RS14230 - hypothetical protein, at 2,727,625 to 2,727,867 _RS14230 LU632_RS14235: LU632_RS14235 - helix-turn-helix domain-containing protein, at 2,727,928 to 2,728,304 _RS14235 LU632_RS14240: LU632_RS14240 - phage antirepressor KilAC domain-containing protein, at 2,728,301 to 2,729,002 _RS14240 LU632_RS14245: LU632_RS14245 - lambda phage CII family protein, at 2,729,021 to 2,729,326 _RS14245 LU632_RS14250: LU632_RS14250 - helix-turn-helix domain-containing protein, at 2,729,438 to 2,729,665 _RS14250 LU632_RS14255: LU632_RS14255 - helix-turn-helix transcriptional regulator, at 2,729,768 to 2,730,499 _RS14255 Position (kb) 2728 2729 2730Strain fitness (log2 ratio) -1 0 1 2at 2728.243 kb on - strand, within LU632_RS14235at 2728.584 kb on + strand, within LU632_RS14240at 2728.584 kb on + strand, within LU632_RS14240at 2728.835 kb on + strand, within LU632_RS14240at 2728.835 kb on + strand, within LU632_RS14240at 2728.848 kb on + strand, within LU632_RS14240at 2728.966 kb on + strandat 2729.007 kb on - strandat 2729.007 kb on - strandat 2729.310 kb on + strandat 2729.377 kb on - strandat 2729.576 kb on - strand, within LU632_RS14250at 2729.576 kb on - strand, within LU632_RS14250

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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2,728,243 - LU632_RS14235 0.84 -0.7
2,728,584 + LU632_RS14240 0.40 +1.1
2,728,584 + LU632_RS14240 0.40 -0.2
2,728,835 + LU632_RS14240 0.76 -0.5
2,728,835 + LU632_RS14240 0.76 +0.7
2,728,848 + LU632_RS14240 0.78 -0.0
2,728,966 + +0.6
2,729,007 - +0.3
2,729,007 - -0.0
2,729,310 + -0.6
2,729,377 - -1.7
2,729,576 - LU632_RS14250 0.61 +2.3
2,729,576 - LU632_RS14250 0.61 -1.1

Or see this region's nucleotide sequence