Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10315 and solA are separated by 88 nucleotides solA and bssS are separated by 108 nucleotides bssS and dinI are separated by 325 nucleotides
LU632_RS10315: LU632_RS10315 - MFS transporter, at 1,971,414 to 1,972,580
_RS10315
LU632_RS10320: solA - N-methyl-L-tryptophan oxidase, at 1,972,669 to 1,973,781
solA
LU632_RS10325: bssS - biofilm formation regulator BssS, at 1,973,890 to 1,974,144
bssS
LU632_RS10330: dinI - DNA damage-inducible protein I, at 1,974,470 to 1,974,715
dinI
Position (kb) 1972
1973
1974 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1971.767 kb on + strand, within LU632_RS10315 at 1971.768 kb on - strand, within LU632_RS10315 at 1971.799 kb on + strand, within LU632_RS10315 at 1971.844 kb on + strand, within LU632_RS10315 at 1971.844 kb on + strand, within LU632_RS10315 at 1971.845 kb on - strand, within LU632_RS10315 at 1971.845 kb on - strand, within LU632_RS10315 at 1971.846 kb on + strand, within LU632_RS10315 at 1971.846 kb on + strand, within LU632_RS10315 at 1971.846 kb on + strand, within LU632_RS10315 at 1971.846 kb on + strand, within LU632_RS10315 at 1971.846 kb on + strand, within LU632_RS10315 at 1971.847 kb on - strand, within LU632_RS10315 at 1971.847 kb on - strand, within LU632_RS10315 at 1971.847 kb on - strand, within LU632_RS10315 at 1971.857 kb on - strand, within LU632_RS10315 at 1971.887 kb on + strand, within LU632_RS10315 at 1971.887 kb on + strand, within LU632_RS10315 at 1971.887 kb on + strand, within LU632_RS10315 at 1971.888 kb on - strand, within LU632_RS10315 at 1971.888 kb on - strand, within LU632_RS10315 at 1971.888 kb on - strand, within LU632_RS10315 at 1971.982 kb on - strand, within LU632_RS10315 at 1972.071 kb on + strand, within LU632_RS10315 at 1972.071 kb on + strand, within LU632_RS10315 at 1972.072 kb on - strand, within LU632_RS10315 at 1972.072 kb on - strand, within LU632_RS10315 at 1972.073 kb on + strand, within LU632_RS10315 at 1972.073 kb on + strand, within LU632_RS10315 at 1972.073 kb on + strand, within LU632_RS10315 at 1972.073 kb on + strand, within LU632_RS10315 at 1972.074 kb on - strand, within LU632_RS10315 at 1972.144 kb on - strand, within LU632_RS10315 at 1972.174 kb on - strand, within LU632_RS10315 at 1972.276 kb on + strand, within LU632_RS10315 at 1972.277 kb on - strand, within LU632_RS10315 at 1972.307 kb on - strand, within LU632_RS10315 at 1972.391 kb on - strand, within LU632_RS10315 at 1972.579 kb on - strand at 1972.609 kb on - strand at 1972.696 kb on + strand at 1972.839 kb on + strand, within solA at 1972.857 kb on - strand, within solA at 1972.981 kb on - strand, within solA at 1973.042 kb on + strand, within solA at 1973.042 kb on + strand, within solA at 1973.043 kb on - strand, within solA at 1973.066 kb on - strand, within solA at 1973.191 kb on + strand, within solA at 1973.275 kb on - strand, within solA at 1973.281 kb on - strand, within solA at 1973.281 kb on - strand, within solA at 1973.281 kb on - strand, within solA at 1973.438 kb on - strand, within solA at 1973.599 kb on + strand, within solA at 1973.599 kb on + strand, within solA at 1973.603 kb on + strand, within solA at 1973.603 kb on + strand, within solA at 1973.604 kb on - strand, within solA at 1973.604 kb on - strand, within solA at 1973.604 kb on - strand, within solA at 1973.699 kb on - strand at 1973.768 kb on - strand at 1973.768 kb on - strand at 1973.768 kb on - strand at 1973.768 kb on - strand at 1973.768 kb on - strand at 1973.775 kb on - strand at 1973.775 kb on - strand at 1973.775 kb on - strand at 1973.775 kb on - strand at 1973.775 kb on - strand at 1973.836 kb on - strand at 1973.836 kb on - strand at 1973.990 kb on - strand, within bssS at 1973.997 kb on - strand, within bssS at 1974.078 kb on + strand, within bssS at 1974.078 kb on + strand, within bssS at 1974.079 kb on - strand, within bssS at 1974.079 kb on - strand, within bssS at 1974.083 kb on - strand, within bssS at 1974.083 kb on - strand, within bssS at 1974.083 kb on - strand, within bssS at 1974.090 kb on + strand, within bssS at 1974.091 kb on - strand, within bssS at 1974.091 kb on - strand, within bssS at 1974.091 kb on - strand, within bssS at 1974.094 kb on - strand, within bssS at 1974.145 kb on + strand at 1974.145 kb on + strand at 1974.160 kb on - strand at 1974.172 kb on + strand at 1974.233 kb on - strand at 1974.235 kb on - strand at 1974.302 kb on + strand at 1974.303 kb on - strand at 1974.350 kb on - strand at 1974.383 kb on - strand at 1974.407 kb on - strand at 1974.408 kb on + strand at 1974.408 kb on + strand at 1974.409 kb on - strand at 1974.409 kb on - strand at 1974.409 kb on - strand at 1974.474 kb on + strand at 1974.474 kb on + strand at 1974.542 kb on + strand, within dinI at 1974.656 kb on + strand, within dinI at 1974.656 kb on + strand, within dinI at 1974.664 kb on + strand, within dinI at 1974.715 kb on + strand at 1974.715 kb on + strand at 1974.730 kb on - strand at 1974.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,971,767 + LU632_RS10315 0.30 +0.4 1,971,768 - LU632_RS10315 0.30 +0.2 1,971,799 + LU632_RS10315 0.33 -0.6 1,971,844 + LU632_RS10315 0.37 +0.3 1,971,844 + LU632_RS10315 0.37 +0.6 1,971,845 - LU632_RS10315 0.37 +0.3 1,971,845 - LU632_RS10315 0.37 -0.1 1,971,846 + LU632_RS10315 0.37 -0.1 1,971,846 + LU632_RS10315 0.37 +0.7 1,971,846 + LU632_RS10315 0.37 -0.1 1,971,846 + LU632_RS10315 0.37 -0.5 1,971,846 + LU632_RS10315 0.37 +0.6 1,971,847 - LU632_RS10315 0.37 +0.5 1,971,847 - LU632_RS10315 0.37 -1.4 1,971,847 - LU632_RS10315 0.37 -0.1 1,971,857 - LU632_RS10315 0.38 +0.3 1,971,887 + LU632_RS10315 0.41 +0.3 1,971,887 + LU632_RS10315 0.41 +0.5 1,971,887 + LU632_RS10315 0.41 +0.6 1,971,888 - LU632_RS10315 0.41 +0.6 1,971,888 - LU632_RS10315 0.41 +0.7 1,971,888 - LU632_RS10315 0.41 -0.6 1,971,982 - LU632_RS10315 0.49 +0.5 1,972,071 + LU632_RS10315 0.56 -0.3 1,972,071 + LU632_RS10315 0.56 -0.5 1,972,072 - LU632_RS10315 0.56 -1.5 1,972,072 - LU632_RS10315 0.56 +0.1 1,972,073 + LU632_RS10315 0.56 +0.3 1,972,073 + LU632_RS10315 0.56 -1.7 1,972,073 + LU632_RS10315 0.56 -0.9 1,972,073 + LU632_RS10315 0.56 +1.2 1,972,074 - LU632_RS10315 0.57 +0.0 1,972,144 - LU632_RS10315 0.63 +0.3 1,972,174 - LU632_RS10315 0.65 +0.2 1,972,276 + LU632_RS10315 0.74 -0.1 1,972,277 - LU632_RS10315 0.74 +1.3 1,972,307 - LU632_RS10315 0.77 +0.0 1,972,391 - LU632_RS10315 0.84 -0.4 1,972,579 - -0.4 1,972,609 - -0.5 1,972,696 + -0.3 1,972,839 + solA LU632_RS10320 0.15 +0.5 1,972,857 - solA LU632_RS10320 0.17 +1.1 1,972,981 - solA LU632_RS10320 0.28 +0.4 1,973,042 + solA LU632_RS10320 0.34 -0.1 1,973,042 + solA LU632_RS10320 0.34 +0.3 1,973,043 - solA LU632_RS10320 0.34 -0.0 1,973,066 - solA LU632_RS10320 0.36 +0.3 1,973,191 + solA LU632_RS10320 0.47 +0.1 1,973,275 - solA LU632_RS10320 0.54 -0.3 1,973,281 - solA LU632_RS10320 0.55 +1.9 1,973,281 - solA LU632_RS10320 0.55 +0.1 1,973,281 - solA LU632_RS10320 0.55 +0.2 1,973,438 - solA LU632_RS10320 0.69 -0.7 1,973,599 + solA LU632_RS10320 0.84 -0.1 1,973,599 + solA LU632_RS10320 0.84 +0.1 1,973,603 + solA LU632_RS10320 0.84 -0.0 1,973,603 + solA LU632_RS10320 0.84 -0.7 1,973,604 - solA LU632_RS10320 0.84 -0.3 1,973,604 - solA LU632_RS10320 0.84 -0.7 1,973,604 - solA LU632_RS10320 0.84 -0.8 1,973,699 - -0.1 1,973,768 - +1.0 1,973,768 - -0.1 1,973,768 - +0.9 1,973,768 - +1.3 1,973,768 - +0.2 1,973,775 - -0.2 1,973,775 - -0.2 1,973,775 - -0.2 1,973,775 - -0.3 1,973,775 - +1.3 1,973,836 - -0.4 1,973,836 - -0.1 1,973,990 - bssS LU632_RS10325 0.39 +0.7 1,973,997 - bssS LU632_RS10325 0.42 +0.1 1,974,078 + bssS LU632_RS10325 0.74 -0.2 1,974,078 + bssS LU632_RS10325 0.74 -2.0 1,974,079 - bssS LU632_RS10325 0.74 -2.0 1,974,079 - bssS LU632_RS10325 0.74 +0.0 1,974,083 - bssS LU632_RS10325 0.76 +0.7 1,974,083 - bssS LU632_RS10325 0.76 -0.8 1,974,083 - bssS LU632_RS10325 0.76 -0.5 1,974,090 + bssS LU632_RS10325 0.78 -0.2 1,974,091 - bssS LU632_RS10325 0.79 +0.9 1,974,091 - bssS LU632_RS10325 0.79 -0.4 1,974,091 - bssS LU632_RS10325 0.79 -1.1 1,974,094 - bssS LU632_RS10325 0.80 -0.0 1,974,145 + -0.4 1,974,145 + -0.1 1,974,160 - +0.7 1,974,172 + -0.3 1,974,233 - -0.1 1,974,235 - -0.8 1,974,302 + -0.2 1,974,303 - -0.5 1,974,350 - +0.3 1,974,383 - -0.3 1,974,407 - -0.5 1,974,408 + +1.9 1,974,408 + +0.7 1,974,409 - -0.2 1,974,409 - -0.2 1,974,409 - -0.1 1,974,474 + -0.1 1,974,474 + -0.4 1,974,542 + dinI LU632_RS10330 0.29 -0.2 1,974,656 + dinI LU632_RS10330 0.76 +0.6 1,974,656 + dinI LU632_RS10330 0.76 +0.1 1,974,664 + dinI LU632_RS10330 0.79 +0.2 1,974,715 + -0.5 1,974,715 + +0.7 1,974,730 - -0.3 1,974,735 - -0.5
Or see this region's nucleotide sequence