Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS09100 and LU632_RS09105 are separated by 621 nucleotides LU632_RS09105 and LU632_RS09110 are separated by 56 nucleotides LU632_RS09110 and LU632_RS09115 are separated by 22 nucleotides
LU632_RS09100: LU632_RS09100 - NADP-dependent oxidoreductase, at 1,711,083 to 1,712,126
_RS09100
LU632_RS09105: LU632_RS09105 - fimbrial protein, at 1,712,748 to 1,713,347
_RS09105
LU632_RS09110: LU632_RS09110 - molecular chaperone, at 1,713,404 to 1,714,144
_RS09110
LU632_RS09115: LU632_RS09115 - fimbrial biogenesis outer membrane usher protein, at 1,714,167 to 1,716,689
_RS09115
Position (kb) 1712
1713
1714 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1711.763 kb on + strand, within LU632_RS09100 at 1711.764 kb on - strand, within LU632_RS09100 at 1711.859 kb on - strand, within LU632_RS09100 at 1711.905 kb on + strand, within LU632_RS09100 at 1711.906 kb on - strand, within LU632_RS09100 at 1711.917 kb on + strand, within LU632_RS09100 at 1711.918 kb on - strand, within LU632_RS09100 at 1711.937 kb on - strand, within LU632_RS09100 at 1711.937 kb on - strand, within LU632_RS09100 at 1711.967 kb on + strand, within LU632_RS09100 at 1711.967 kb on - strand, within LU632_RS09100 at 1711.968 kb on - strand, within LU632_RS09100 at 1711.968 kb on - strand, within LU632_RS09100 at 1711.969 kb on + strand, within LU632_RS09100 at 1711.969 kb on + strand, within LU632_RS09100 at 1712.096 kb on + strand at 1712.097 kb on - strand at 1712.097 kb on - strand at 1712.764 kb on + strand at 1712.773 kb on + strand at 1712.972 kb on + strand, within LU632_RS09105 at 1712.999 kb on + strand, within LU632_RS09105 at 1713.005 kb on - strand, within LU632_RS09105 at 1713.221 kb on - strand, within LU632_RS09105 at 1713.228 kb on + strand, within LU632_RS09105 at 1713.229 kb on - strand, within LU632_RS09105 at 1713.251 kb on + strand, within LU632_RS09105 at 1713.271 kb on - strand, within LU632_RS09105 at 1713.273 kb on + strand, within LU632_RS09105 at 1713.274 kb on - strand, within LU632_RS09105 at 1713.274 kb on - strand, within LU632_RS09105 at 1713.276 kb on - strand, within LU632_RS09105 at 1713.279 kb on + strand, within LU632_RS09105 at 1713.280 kb on - strand, within LU632_RS09105 at 1713.280 kb on - strand, within LU632_RS09105 at 1713.336 kb on - strand at 1713.340 kb on - strand at 1713.385 kb on - strand at 1713.567 kb on + strand, within LU632_RS09110 at 1713.782 kb on + strand, within LU632_RS09110 at 1713.783 kb on - strand, within LU632_RS09110 at 1713.902 kb on - strand, within LU632_RS09110 at 1713.995 kb on - strand, within LU632_RS09110 at 1714.316 kb on + strand at 1714.347 kb on + strand at 1714.347 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,711,763 + LU632_RS09100 0.65 -0.2 1,711,764 - LU632_RS09100 0.65 +0.1 1,711,859 - LU632_RS09100 0.74 -0.5 1,711,905 + LU632_RS09100 0.79 -0.6 1,711,906 - LU632_RS09100 0.79 +1.2 1,711,917 + LU632_RS09100 0.80 -0.6 1,711,918 - LU632_RS09100 0.80 +0.4 1,711,937 - LU632_RS09100 0.82 -2.9 1,711,937 - LU632_RS09100 0.82 -0.2 1,711,967 + LU632_RS09100 0.85 -1.0 1,711,967 - LU632_RS09100 0.85 +0.2 1,711,968 - LU632_RS09100 0.85 +1.4 1,711,968 - LU632_RS09100 0.85 +0.8 1,711,969 + LU632_RS09100 0.85 +0.0 1,711,969 + LU632_RS09100 0.85 -0.1 1,712,096 + +0.6 1,712,097 - +0.7 1,712,097 - -0.8 1,712,764 + -1.3 1,712,773 + +1.4 1,712,972 + LU632_RS09105 0.37 +0.1 1,712,999 + LU632_RS09105 0.42 -0.5 1,713,005 - LU632_RS09105 0.43 +0.4 1,713,221 - LU632_RS09105 0.79 -0.1 1,713,228 + LU632_RS09105 0.80 -0.6 1,713,229 - LU632_RS09105 0.80 -1.7 1,713,251 + LU632_RS09105 0.84 +0.1 1,713,271 - LU632_RS09105 0.87 +0.1 1,713,273 + LU632_RS09105 0.88 -0.2 1,713,274 - LU632_RS09105 0.88 -0.6 1,713,274 - LU632_RS09105 0.88 -0.3 1,713,276 - LU632_RS09105 0.88 -0.0 1,713,279 + LU632_RS09105 0.89 -0.5 1,713,280 - LU632_RS09105 0.89 +0.9 1,713,280 - LU632_RS09105 0.89 -0.6 1,713,336 - -0.5 1,713,340 - +0.4 1,713,385 - +0.5 1,713,567 + LU632_RS09110 0.22 -0.7 1,713,782 + LU632_RS09110 0.51 +1.1 1,713,783 - LU632_RS09110 0.51 +0.5 1,713,902 - LU632_RS09110 0.67 +0.1 1,713,995 - LU632_RS09110 0.80 -0.1 1,714,316 + +1.1 1,714,347 + +0.2 1,714,347 + -1.2
Or see this region's nucleotide sequence