Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisG and hisL are separated by 164 nucleotides hisL and LU632_RS08960 are separated by 179 nucleotides LU632_RS08960 and LU632_RS08965 are separated by 120 nucleotides LU632_RS08965 and LU632_RS08970 overlap by 1 nucleotides
LU632_RS08950: hisG - ATP phosphoribosyltransferase, at 1,689,642 to 1,690,541
hisG
LU632_RS08955: hisL - his operon leader peptide, at 1,690,706 to 1,690,753
hisL
LU632_RS08960: LU632_RS08960 - SDR family oxidoreductase, at 1,690,933 to 1,691,757
_RS08960
LU632_RS08965: LU632_RS08965 - hypothetical protein, at 1,691,878 to 1,692,228
_RS08965
LU632_RS08970: LU632_RS08970 - ATP-binding cassette domain-containing protein, at 1,692,228 to 1,692,677
_RS08970
Position (kb) 1690
1691
1692 Strain fitness (log2 ratio) -2
-1
0
1 at 1689.976 kb on + strand, within hisG at 1689.977 kb on - strand, within hisG at 1690.103 kb on + strand, within hisG at 1690.130 kb on - strand, within hisG at 1690.130 kb on - strand, within hisG at 1690.196 kb on - strand, within hisG at 1690.196 kb on - strand, within hisG at 1690.395 kb on - strand, within hisG at 1690.422 kb on + strand, within hisG at 1690.511 kb on + strand at 1690.512 kb on - strand at 1690.515 kb on + strand at 1690.515 kb on + strand at 1690.516 kb on - strand at 1690.536 kb on + strand at 1690.536 kb on + strand at 1690.545 kb on - strand at 1690.545 kb on - strand at 1690.776 kb on - strand at 1690.780 kb on - strand at 1690.895 kb on - strand at 1690.913 kb on + strand at 1691.154 kb on + strand, within LU632_RS08960 at 1691.155 kb on - strand, within LU632_RS08960 at 1691.279 kb on + strand, within LU632_RS08960 at 1691.523 kb on + strand, within LU632_RS08960 at 1691.525 kb on + strand, within LU632_RS08960 at 1691.563 kb on + strand, within LU632_RS08960 at 1691.572 kb on - strand, within LU632_RS08960 at 1691.572 kb on - strand, within LU632_RS08960 at 1691.605 kb on + strand, within LU632_RS08960 at 1691.700 kb on - strand at 1691.700 kb on - strand at 1691.867 kb on - strand at 1691.934 kb on + strand, within LU632_RS08965 at 1691.986 kb on + strand, within LU632_RS08965 at 1691.986 kb on + strand, within LU632_RS08965 at 1691.987 kb on - strand, within LU632_RS08965 at 1691.987 kb on - strand, within LU632_RS08965 at 1691.987 kb on - strand, within LU632_RS08965 at 1692.034 kb on - strand, within LU632_RS08965 at 1692.045 kb on + strand, within LU632_RS08965 at 1692.045 kb on + strand, within LU632_RS08965 at 1692.046 kb on - strand, within LU632_RS08965 at 1692.046 kb on - strand, within LU632_RS08965 at 1692.275 kb on + strand, within LU632_RS08970 at 1692.275 kb on + strand, within LU632_RS08970 at 1692.498 kb on + strand, within LU632_RS08970 at 1692.608 kb on + strand, within LU632_RS08970 at 1692.608 kb on + strand, within LU632_RS08970 at 1692.608 kb on + strand, within LU632_RS08970 at 1692.609 kb on - strand, within LU632_RS08970 at 1692.643 kb on + strand at 1692.663 kb on - strand at 1692.663 kb on - strand at 1692.683 kb on - strand at 1692.703 kb on + strand at 1692.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,689,976 + hisG LU632_RS08950 0.37 -0.3 1,689,977 - hisG LU632_RS08950 0.37 -0.6 1,690,103 + hisG LU632_RS08950 0.51 +0.4 1,690,130 - hisG LU632_RS08950 0.54 -0.4 1,690,130 - hisG LU632_RS08950 0.54 +0.4 1,690,196 - hisG LU632_RS08950 0.62 +1.4 1,690,196 - hisG LU632_RS08950 0.62 +0.1 1,690,395 - hisG LU632_RS08950 0.84 -0.8 1,690,422 + hisG LU632_RS08950 0.87 +0.3 1,690,511 + -2.1 1,690,512 - +1.4 1,690,515 + +0.5 1,690,515 + -0.2 1,690,516 - -0.3 1,690,536 + +0.2 1,690,536 + +1.4 1,690,545 - -0.6 1,690,545 - +0.4 1,690,776 - -0.6 1,690,780 - +0.1 1,690,895 - -0.1 1,690,913 + -0.3 1,691,154 + LU632_RS08960 0.27 +0.6 1,691,155 - LU632_RS08960 0.27 +0.6 1,691,279 + LU632_RS08960 0.42 +0.5 1,691,523 + LU632_RS08960 0.72 -0.0 1,691,525 + LU632_RS08960 0.72 +1.4 1,691,563 + LU632_RS08960 0.76 -0.1 1,691,572 - LU632_RS08960 0.77 -0.4 1,691,572 - LU632_RS08960 0.77 -0.7 1,691,605 + LU632_RS08960 0.81 +0.6 1,691,700 - -0.3 1,691,700 - +0.2 1,691,867 - +1.4 1,691,934 + LU632_RS08965 0.16 +0.8 1,691,986 + LU632_RS08965 0.31 +0.1 1,691,986 + LU632_RS08965 0.31 +0.7 1,691,987 - LU632_RS08965 0.31 +0.7 1,691,987 - LU632_RS08965 0.31 -0.2 1,691,987 - LU632_RS08965 0.31 +0.1 1,692,034 - LU632_RS08965 0.44 +1.4 1,692,045 + LU632_RS08965 0.48 -0.5 1,692,045 + LU632_RS08965 0.48 -0.6 1,692,046 - LU632_RS08965 0.48 -0.6 1,692,046 - LU632_RS08965 0.48 +1.0 1,692,275 + LU632_RS08970 0.10 -0.0 1,692,275 + LU632_RS08970 0.10 +0.1 1,692,498 + LU632_RS08970 0.60 +1.0 1,692,608 + LU632_RS08970 0.84 +0.4 1,692,608 + LU632_RS08970 0.84 -0.1 1,692,608 + LU632_RS08970 0.84 -1.1 1,692,609 - LU632_RS08970 0.85 +0.5 1,692,643 + -0.3 1,692,663 - -0.4 1,692,663 - -1.1 1,692,683 - -0.6 1,692,703 + -0.1 1,692,703 + +0.4
Or see this region's nucleotide sequence