Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08875 and LU632_RS08880 are separated by 75 nucleotides LU632_RS08880 and LU632_RS08885 are separated by 7 nucleotides LU632_RS08885 and gndA are separated by 184 nucleotides
LU632_RS08875: LU632_RS08875 - hypothetical protein, at 1,675,732 to 1,677,027
_RS08875
LU632_RS08880: LU632_RS08880 - ABC transporter permease, at 1,677,103 to 1,677,828
_RS08880
LU632_RS08885: LU632_RS08885 - ABC transporter ATP-binding protein, at 1,677,836 to 1,678,600
_RS08885
LU632_RS08890: gndA - NADP-dependent phosphogluconate dehydrogenase, at 1,678,785 to 1,680,191
gndA
Position (kb) 1677
1678
1679 Strain fitness (log2 ratio) -1
0
1 at 1677.166 kb on - strand at 1677.291 kb on + strand, within LU632_RS08880 at 1677.599 kb on - strand, within LU632_RS08880 at 1677.657 kb on - strand, within LU632_RS08880 at 1677.737 kb on - strand, within LU632_RS08880 at 1678.060 kb on - strand, within LU632_RS08885 at 1678.060 kb on - strand, within LU632_RS08885 at 1678.182 kb on - strand, within LU632_RS08885 at 1678.292 kb on + strand, within LU632_RS08885 at 1678.357 kb on - strand, within LU632_RS08885 at 1678.428 kb on + strand, within LU632_RS08885 at 1678.428 kb on + strand, within LU632_RS08885 at 1678.582 kb on + strand at 1678.783 kb on + strand at 1679.188 kb on + strand, within gndA at 1679.189 kb on - strand, within gndA at 1679.205 kb on - strand, within gndA
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,677,166 - -1.3 1,677,291 + LU632_RS08880 0.26 -0.5 1,677,599 - LU632_RS08880 0.68 -0.3 1,677,657 - LU632_RS08880 0.76 -0.8 1,677,737 - LU632_RS08880 0.87 -1.0 1,678,060 - LU632_RS08885 0.29 -1.0 1,678,060 - LU632_RS08885 0.29 -0.8 1,678,182 - LU632_RS08885 0.45 +0.4 1,678,292 + LU632_RS08885 0.60 +0.6 1,678,357 - LU632_RS08885 0.68 -0.6 1,678,428 + LU632_RS08885 0.77 -1.5 1,678,428 + LU632_RS08885 0.77 +0.1 1,678,582 + -0.3 1,678,783 + +0.1 1,679,188 + gndA LU632_RS08890 0.29 +0.4 1,679,189 - gndA LU632_RS08890 0.29 +0.8 1,679,205 - gndA LU632_RS08890 0.30 -0.4
Or see this region's nucleotide sequence