Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt apbC and LU632_RS08580 are separated by 33 nucleotides LU632_RS08580 and LU632_RS08585 are separated by 29 nucleotides LU632_RS08585 and thiD are separated by 106 nucleotides thiD and LU632_RS08595 are separated by 41 nucleotides
LU632_RS08575: apbC - iron-sulfur cluster carrier protein ApbC, at 1,611,413 to 1,612,522
apbC
LU632_RS08580: LU632_RS08580 - hypothetical protein, at 1,612,556 to 1,612,714
_RS08580
LU632_RS08585: LU632_RS08585 - hydroxyethylthiazole kinase, at 1,612,744 to 1,613,361
_RS08585
LU632_RS08590: thiD - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 1,613,468 to 1,614,268
thiD
LU632_RS08595: LU632_RS08595 - hypothetical protein, at 1,614,310 to 1,614,471
_RS08595
Position (kb) 1612
1613
1614 Strain fitness (log2 ratio) -1
0
1 at 1611.871 kb on + strand, within apbC at 1611.871 kb on + strand, within apbC at 1611.965 kb on + strand, within apbC at 1611.989 kb on - strand, within apbC at 1611.989 kb on - strand, within apbC at 1611.989 kb on - strand, within apbC at 1612.109 kb on - strand, within apbC at 1612.124 kb on - strand, within apbC at 1612.124 kb on - strand, within apbC at 1612.219 kb on - strand, within apbC at 1612.224 kb on + strand, within apbC at 1612.243 kb on + strand, within apbC at 1612.244 kb on - strand, within apbC at 1612.257 kb on + strand, within apbC at 1612.258 kb on - strand, within apbC at 1612.258 kb on - strand, within apbC at 1612.258 kb on - strand, within apbC at 1612.557 kb on + strand at 1612.635 kb on + strand, within LU632_RS08580 at 1612.636 kb on - strand, within LU632_RS08580 at 1612.691 kb on - strand, within LU632_RS08580 at 1613.007 kb on - strand, within LU632_RS08585 at 1613.046 kb on + strand, within LU632_RS08585 at 1613.357 kb on + strand at 1613.372 kb on + strand at 1613.372 kb on + strand at 1613.372 kb on + strand at 1613.418 kb on - strand at 1613.418 kb on - strand at 1613.480 kb on - strand at 1614.076 kb on - strand, within thiD at 1614.165 kb on + strand, within thiD at 1614.166 kb on - strand, within thiD at 1614.166 kb on - strand, within thiD
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,611,871 + apbC LU632_RS08575 0.41 +0.1 1,611,871 + apbC LU632_RS08575 0.41 -0.7 1,611,965 + apbC LU632_RS08575 0.50 -0.0 1,611,989 - apbC LU632_RS08575 0.52 +1.2 1,611,989 - apbC LU632_RS08575 0.52 -0.6 1,611,989 - apbC LU632_RS08575 0.52 -0.1 1,612,109 - apbC LU632_RS08575 0.63 -0.0 1,612,124 - apbC LU632_RS08575 0.64 -0.7 1,612,124 - apbC LU632_RS08575 0.64 +0.1 1,612,219 - apbC LU632_RS08575 0.73 -0.6 1,612,224 + apbC LU632_RS08575 0.73 -1.2 1,612,243 + apbC LU632_RS08575 0.75 +1.4 1,612,244 - apbC LU632_RS08575 0.75 -0.5 1,612,257 + apbC LU632_RS08575 0.76 -1.6 1,612,258 - apbC LU632_RS08575 0.76 -0.4 1,612,258 - apbC LU632_RS08575 0.76 -0.8 1,612,258 - apbC LU632_RS08575 0.76 -0.9 1,612,557 + -0.6 1,612,635 + LU632_RS08580 0.50 +1.6 1,612,636 - LU632_RS08580 0.50 -0.2 1,612,691 - LU632_RS08580 0.85 +0.0 1,613,007 - LU632_RS08585 0.43 +0.3 1,613,046 + LU632_RS08585 0.49 +0.2 1,613,357 + -0.3 1,613,372 + +0.6 1,613,372 + -0.2 1,613,372 + +0.7 1,613,418 - +0.3 1,613,418 - +0.4 1,613,480 - +0.3 1,614,076 - thiD LU632_RS08590 0.76 -0.0 1,614,165 + thiD LU632_RS08590 0.87 -0.2 1,614,166 - thiD LU632_RS08590 0.87 +0.4 1,614,166 - thiD LU632_RS08590 0.87 +0.1
Or see this region's nucleotide sequence