Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08015

Experiment: HBM-CucXylem

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HBM-CucXylem
1,500,445	+	nuoI	LU632_RS08000	0.82	-0.8
1,500,446	-	nuoI	LU632_RS08000	0.82	-1.4
1,500,446	-	nuoI	LU632_RS08000	0.82	-1.9
1,500,537	+				+0.9
1,500,537	+				+1.5
1,500,643	+	nuoJ	LU632_RS08005	0.16	+0.5
1,500,643	+	nuoJ	LU632_RS08005	0.16	-0.5
1,500,643	+	nuoJ	LU632_RS08005	0.16	-0.7
1,500,643	+	nuoJ	LU632_RS08005	0.16	+0.7
1,500,643	+	nuoJ	LU632_RS08005	0.16	+0.5
1,500,643	+	nuoJ	LU632_RS08005	0.16	-0.1
1,500,644	-	nuoJ	LU632_RS08005	0.16	-0.7
1,500,644	-	nuoJ	LU632_RS08005	0.16	+0.5
1,500,644	-	nuoJ	LU632_RS08005	0.16	-2.0
1,500,645	+	nuoJ	LU632_RS08005	0.16	-1.8
1,500,645	+	nuoJ	LU632_RS08005	0.16	-0.5
1,500,645	+	nuoJ	LU632_RS08005	0.16	-0.1
1,500,646	-	nuoJ	LU632_RS08005	0.17	-1.4
1,500,879	+	nuoJ	LU632_RS08005	0.59	-1.9
1,500,880	-	nuoJ	LU632_RS08005	0.59	-1.0
1,500,964	-	nuoJ	LU632_RS08005	0.74	-1.9
1,501,020	+	nuoJ	LU632_RS08005	0.85	-0.5
1,501,021	-	nuoJ	LU632_RS08005	0.85	-0.6
1,501,190	-	nuoK	LU632_RS08010	0.30	-0.1
1,501,283	+	nuoK	LU632_RS08010	0.60	-1.4
1,501,283	+	nuoK	LU632_RS08010	0.60	-2.7
1,501,283	+	nuoK	LU632_RS08010	0.60	-0.5
1,501,283	+	nuoK	LU632_RS08010	0.60	-2.2
1,501,283	+	nuoK	LU632_RS08010	0.60	-1.4
1,501,283	+	nuoK	LU632_RS08010	0.60	+0.9
1,501,283	+	nuoK	LU632_RS08010	0.60	-0.2
1,501,283	+	nuoK	LU632_RS08010	0.60	-1.5
1,501,284	-	nuoK	LU632_RS08010	0.61	+0.7
1,501,284	-	nuoK	LU632_RS08010	0.61	+0.9
1,501,284	-	nuoK	LU632_RS08010	0.61	-1.5
1,501,533	+				-0.9
1,501,533	+				-1.1
1,501,533	+				-0.5
1,501,534	-				-1.6
1,501,537	+				-0.9
1,501,537	+				-2.6
1,501,538	-				+0.1
1,501,715	-	nuoL	LU632_RS08015	0.17	-2.0
1,501,715	-	nuoL	LU632_RS08015	0.17	-0.9
1,501,716	+	nuoL	LU632_RS08015	0.17	-0.5
1,501,716	+	nuoL	LU632_RS08015	0.17	+0.5
1,501,717	-	nuoL	LU632_RS08015	0.17	-0.7
1,501,756	-	nuoL	LU632_RS08015	0.19	-1.4
1,501,756	-	nuoL	LU632_RS08015	0.19	-1.7
1,501,816	+	nuoL	LU632_RS08015	0.23	-0.9
1,501,817	-	nuoL	LU632_RS08015	0.23	+0.1
1,501,850	-	nuoL	LU632_RS08015	0.25	-1.0
1,501,867	+	nuoL	LU632_RS08015	0.25	-0.9
1,501,867	+	nuoL	LU632_RS08015	0.25	-1.3
1,501,868	-	nuoL	LU632_RS08015	0.26	+0.8
1,501,868	-	nuoL	LU632_RS08015	0.26	-1.2
1,501,868	-	nuoL	LU632_RS08015	0.26	-1.5
1,501,870	+	nuoL	LU632_RS08015	0.26	+0.7
1,501,911	+	nuoL	LU632_RS08015	0.28	-1.0
1,502,037	+	nuoL	LU632_RS08015	0.35	-1.5
1,502,037	+	nuoL	LU632_RS08015	0.35	-2.5
1,502,037	+	nuoL	LU632_RS08015	0.35	+0.5
1,502,038	-	nuoL	LU632_RS08015	0.35	-0.4
1,502,251	-	nuoL	LU632_RS08015	0.46	-0.4
1,502,251	-	nuoL	LU632_RS08015	0.46	+0.3
1,502,326	+	nuoL	LU632_RS08015	0.50	-0.5
1,502,351	-	nuoL	LU632_RS08015	0.52	-0.1
1,502,352	+	nuoL	LU632_RS08015	0.52	-1.7
1,502,352	+	nuoL	LU632_RS08015	0.52	-1.1
1,502,352	+	nuoL	LU632_RS08015	0.52	-0.1
1,502,352	+	nuoL	LU632_RS08015	0.52	+0.6
1,502,352	+	nuoL	LU632_RS08015	0.52	-1.1
1,502,353	-	nuoL	LU632_RS08015	0.52	+0.1
1,502,353	-	nuoL	LU632_RS08015	0.52	+0.5
1,502,505	+	nuoL	LU632_RS08015	0.60	-2.2
1,502,506	-	nuoL	LU632_RS08015	0.60	-0.5
1,502,524	+	nuoL	LU632_RS08015	0.61	+0.1
1,502,525	-	nuoL	LU632_RS08015	0.61	+1.5
1,502,667	+	nuoL	LU632_RS08015	0.69	-0.2
1,502,668	-	nuoL	LU632_RS08015	0.69	-1.3
1,502,680	+	nuoL	LU632_RS08015	0.70	+0.0
1,502,680	+	nuoL	LU632_RS08015	0.70	-1.1
1,502,681	-	nuoL	LU632_RS08015	0.70	+0.5
1,502,682	+	nuoL	LU632_RS08015	0.70	-0.9
1,502,683	-	nuoL	LU632_RS08015	0.70	-1.5
1,502,752	-	nuoL	LU632_RS08015	0.74	-2.4
1,502,777	+	nuoL	LU632_RS08015	0.75	-1.7
1,502,778	-	nuoL	LU632_RS08015	0.75	-0.7
1,503,229	+				+0.2
1,503,294	+				+0.1
1,503,305	+				+0.2
1,503,305	+				+0.5
1,503,359	+				-0.4
1,503,365	-				-1.2
1,503,365	-				+0.1
1,503,365	-				+1.5
1,503,372	+				+0.6
1,503,373	-				-0.7
1,503,373	-				-1.5
1,503,476	-				-0.1
1,503,477	+				-0.8
1,503,657	-	nuoM	LU632_RS08020	0.13	-1.7
1,503,688	+	nuoM	LU632_RS08020	0.15	+0.2
1,503,909	-	nuoM	LU632_RS08020	0.30	-0.1
1,503,909	-	nuoM	LU632_RS08020	0.30	-2.6
1,503,909	-	nuoM	LU632_RS08020	0.30	-0.6
1,503,909	-	nuoM	LU632_RS08020	0.30	+0.0
1,503,986	+	nuoM	LU632_RS08020	0.35	-0.1
1,503,986	+	nuoM	LU632_RS08020	0.35	+0.7
1,503,987	-	nuoM	LU632_RS08020	0.35	-1.3
1,503,987	-	nuoM	LU632_RS08020	0.35	-1.4
1,503,987	-	nuoM	LU632_RS08020	0.35	-1.3
1,504,035	+	nuoM	LU632_RS08020	0.38	-0.1
1,504,077	-	nuoM	LU632_RS08020	0.41	+0.1
1,504,119	-	nuoM	LU632_RS08020	0.43	-0.5
1,504,119	-	nuoM	LU632_RS08020	0.43	-0.5