Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nuoC and nuoE are separated by 2 nucleotides nuoE and nuoF overlap by 4 nucleotides
LU632_RS07975: nuoC - NADH-quinone oxidoreductase subunit C/D, at 1,492,513 to 1,494,312
nuoC
LU632_RS07980: nuoE - NADH-quinone oxidoreductase subunit NuoE, at 1,494,315 to 1,494,830
nuoE
LU632_RS07985: nuoF - NADH-quinone oxidoreductase subunit NuoF, at 1,494,827 to 1,496,173
nuoF
Position (kb) 1494
1495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1493.454 kb on + strand, within nuoC at 1493.473 kb on + strand, within nuoC at 1493.473 kb on + strand, within nuoC at 1493.474 kb on - strand, within nuoC at 1493.474 kb on - strand, within nuoC at 1493.474 kb on - strand, within nuoC at 1493.474 kb on - strand, within nuoC at 1493.474 kb on - strand, within nuoC at 1493.475 kb on + strand, within nuoC at 1493.475 kb on + strand, within nuoC at 1493.475 kb on + strand, within nuoC at 1493.475 kb on + strand, within nuoC at 1493.476 kb on - strand, within nuoC at 1493.476 kb on - strand, within nuoC at 1493.476 kb on - strand, within nuoC at 1493.481 kb on + strand, within nuoC at 1493.482 kb on - strand, within nuoC at 1493.565 kb on + strand, within nuoC at 1493.690 kb on - strand, within nuoC at 1493.826 kb on + strand, within nuoC at 1494.009 kb on + strand, within nuoC at 1494.145 kb on + strand at 1494.146 kb on - strand at 1494.146 kb on - strand at 1494.148 kb on + strand at 1494.196 kb on - strand at 1494.269 kb on - strand at 1494.314 kb on + strand at 1494.315 kb on - strand at 1494.708 kb on - strand, within nuoE at 1494.773 kb on + strand, within nuoE at 1494.850 kb on + strand at 1495.127 kb on + strand, within nuoF at 1495.128 kb on - strand, within nuoF at 1495.128 kb on - strand, within nuoF at 1495.130 kb on - strand, within nuoF at 1495.218 kb on - strand, within nuoF at 1495.218 kb on - strand, within nuoF at 1495.218 kb on - strand, within nuoF at 1495.219 kb on + strand, within nuoF at 1495.219 kb on + strand, within nuoF at 1495.220 kb on - strand, within nuoF at 1495.220 kb on - strand, within nuoF at 1495.220 kb on - strand, within nuoF at 1495.239 kb on - strand, within nuoF at 1495.296 kb on - strand, within nuoF at 1495.364 kb on + strand, within nuoF at 1495.547 kb on - strand, within nuoF at 1495.661 kb on + strand, within nuoF at 1495.662 kb on - strand, within nuoF at 1495.662 kb on - strand, within nuoF
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,493,454 + nuoC LU632_RS07975 0.52 -0.9 1,493,473 + nuoC LU632_RS07975 0.53 +2.0 1,493,473 + nuoC LU632_RS07975 0.53 -1.8 1,493,474 - nuoC LU632_RS07975 0.53 +0.2 1,493,474 - nuoC LU632_RS07975 0.53 -1.1 1,493,474 - nuoC LU632_RS07975 0.53 -0.6 1,493,474 - nuoC LU632_RS07975 0.53 -2.2 1,493,474 - nuoC LU632_RS07975 0.53 -1.4 1,493,475 + nuoC LU632_RS07975 0.53 +0.1 1,493,475 + nuoC LU632_RS07975 0.53 -2.0 1,493,475 + nuoC LU632_RS07975 0.53 +0.3 1,493,475 + nuoC LU632_RS07975 0.53 -1.1 1,493,476 - nuoC LU632_RS07975 0.54 -1.6 1,493,476 - nuoC LU632_RS07975 0.54 -1.4 1,493,476 - nuoC LU632_RS07975 0.54 -0.1 1,493,481 + nuoC LU632_RS07975 0.54 -0.4 1,493,482 - nuoC LU632_RS07975 0.54 -1.4 1,493,565 + nuoC LU632_RS07975 0.58 -1.6 1,493,690 - nuoC LU632_RS07975 0.65 +0.4 1,493,826 + nuoC LU632_RS07975 0.73 -2.6 1,494,009 + nuoC LU632_RS07975 0.83 -2.3 1,494,145 + -1.8 1,494,146 - -0.8 1,494,146 - -1.0 1,494,148 + -2.6 1,494,196 - -0.7 1,494,269 - -1.6 1,494,314 + -2.7 1,494,315 - -1.8 1,494,708 - nuoE LU632_RS07980 0.76 -0.1 1,494,773 + nuoE LU632_RS07980 0.89 -1.1 1,494,850 + -0.6 1,495,127 + nuoF LU632_RS07985 0.22 -0.1 1,495,128 - nuoF LU632_RS07985 0.22 -2.1 1,495,128 - nuoF LU632_RS07985 0.22 -1.8 1,495,130 - nuoF LU632_RS07985 0.22 -1.4 1,495,218 - nuoF LU632_RS07985 0.29 +0.2 1,495,218 - nuoF LU632_RS07985 0.29 -0.4 1,495,218 - nuoF LU632_RS07985 0.29 -0.1 1,495,219 + nuoF LU632_RS07985 0.29 -0.6 1,495,219 + nuoF LU632_RS07985 0.29 -1.4 1,495,220 - nuoF LU632_RS07985 0.29 -0.6 1,495,220 - nuoF LU632_RS07985 0.29 -1.4 1,495,220 - nuoF LU632_RS07985 0.29 -1.1 1,495,239 - nuoF LU632_RS07985 0.31 -2.3 1,495,296 - nuoF LU632_RS07985 0.35 -1.6 1,495,364 + nuoF LU632_RS07985 0.40 -0.8 1,495,547 - nuoF LU632_RS07985 0.53 -3.2 1,495,661 + nuoF LU632_RS07985 0.62 -0.7 1,495,662 - nuoF LU632_RS07985 0.62 -1.1 1,495,662 - nuoF LU632_RS07985 0.62 -0.1
Or see this region's nucleotide sequence