Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07815 and LU632_RS07820 are separated by 109 nucleotides LU632_RS07820 and truA overlap by 1 nucleotides truA and LU632_RS07830 are separated by 29 nucleotides
LU632_RS07815: LU632_RS07815 - DUF3410 domain-containing protein, at 1,458,592 to 1,459,704
_RS07815
LU632_RS07820: LU632_RS07820 - aspartate-semialdehyde dehydrogenase, at 1,459,814 to 1,460,824
_RS07820
LU632_RS07825: truA - tRNA pseudouridine(38-40) synthase TruA, at 1,460,824 to 1,461,639
truA
LU632_RS07830: LU632_RS07830 - DedA family protein, at 1,461,669 to 1,462,328
_RS07830
Position (kb) 1459
1460
1461 Strain fitness (log2 ratio) -1
0
1
2 at 1459.752 kb on + strand at 1459.780 kb on + strand at 1460.277 kb on + strand, within LU632_RS07820 at 1460.281 kb on + strand, within LU632_RS07820 at 1460.352 kb on + strand, within LU632_RS07820 at 1460.473 kb on + strand, within LU632_RS07820 at 1460.473 kb on + strand, within LU632_RS07820 at 1460.601 kb on + strand, within LU632_RS07820 at 1460.658 kb on + strand, within LU632_RS07820 at 1460.686 kb on + strand, within LU632_RS07820 at 1461.159 kb on + strand, within truA at 1461.637 kb on + strand at 1461.637 kb on + strand at 1461.653 kb on + strand at 1461.653 kb on + strand at 1461.668 kb on + strand at 1461.669 kb on - strand at 1461.741 kb on + strand, within LU632_RS07830 at 1461.757 kb on - strand, within LU632_RS07830 at 1461.764 kb on - strand, within LU632_RS07830 at 1461.797 kb on - strand, within LU632_RS07830
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,459,752 + -0.7 1,459,780 + -0.1 1,460,277 + LU632_RS07820 0.46 +2.0 1,460,281 + LU632_RS07820 0.46 -0.9 1,460,352 + LU632_RS07820 0.53 -0.9 1,460,473 + LU632_RS07820 0.65 +1.4 1,460,473 + LU632_RS07820 0.65 -0.4 1,460,601 + LU632_RS07820 0.78 -0.2 1,460,658 + LU632_RS07820 0.83 -1.4 1,460,686 + LU632_RS07820 0.86 -0.2 1,461,159 + truA LU632_RS07825 0.41 -0.1 1,461,637 + -0.0 1,461,637 + +0.1 1,461,653 + -0.1 1,461,653 + -0.1 1,461,668 + +0.0 1,461,669 - +0.9 1,461,741 + LU632_RS07830 0.11 +1.4 1,461,757 - LU632_RS07830 0.13 +0.2 1,461,764 - LU632_RS07830 0.14 +1.4 1,461,797 - LU632_RS07830 0.19 -0.1
Or see this region's nucleotide sequence