Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07380 and LU632_RS07385 are separated by 282 nucleotides LU632_RS07385 and LU632_RS07390 are separated by 124 nucleotides LU632_RS07390 and LU632_RS07395 are separated by 39 nucleotides LU632_RS07395 and LU632_RS07400 are separated by 26 nucleotides
LU632_RS07380: LU632_RS07380 - DUF2913 family protein, at 1,392,734 to 1,393,072
_RS07380
LU632_RS07385: LU632_RS07385 - recombinase family protein, at 1,393,355 to 1,393,942
_RS07385
LU632_RS07390: LU632_RS07390 - Rpn family recombination-promoting nuclease/putative transposase, at 1,394,067 to 1,395,032
_RS07390
LU632_RS07395: LU632_RS07395 - DUF2913 family protein, at 1,395,072 to 1,395,653
_RS07395
LU632_RS07400: LU632_RS07400 - hypothetical protein, at 1,395,680 to 1,396,270
_RS07400
Position (kb) 1394
1395
1396 Strain fitness (log2 ratio) -1
0
1
2 at 1393.160 kb on + strand at 1393.488 kb on + strand, within LU632_RS07385 at 1393.488 kb on + strand, within LU632_RS07385 at 1393.489 kb on - strand, within LU632_RS07385 at 1393.861 kb on + strand, within LU632_RS07385 at 1394.048 kb on - strand at 1394.191 kb on + strand, within LU632_RS07390 at 1394.192 kb on - strand, within LU632_RS07390 at 1394.192 kb on - strand, within LU632_RS07390 at 1394.237 kb on + strand, within LU632_RS07390 at 1394.259 kb on + strand, within LU632_RS07390 at 1394.277 kb on + strand, within LU632_RS07390 at 1394.277 kb on + strand, within LU632_RS07390 at 1394.308 kb on - strand, within LU632_RS07390 at 1394.313 kb on + strand, within LU632_RS07390 at 1394.313 kb on + strand, within LU632_RS07390 at 1394.313 kb on + strand, within LU632_RS07390 at 1394.314 kb on - strand, within LU632_RS07390 at 1394.314 kb on - strand, within LU632_RS07390 at 1394.316 kb on - strand, within LU632_RS07390 at 1394.316 kb on - strand, within LU632_RS07390 at 1394.316 kb on - strand, within LU632_RS07390 at 1394.529 kb on + strand, within LU632_RS07390 at 1394.529 kb on + strand, within LU632_RS07390 at 1394.529 kb on + strand, within LU632_RS07390 at 1394.620 kb on + strand, within LU632_RS07390 at 1394.620 kb on + strand, within LU632_RS07390 at 1394.620 kb on + strand, within LU632_RS07390 at 1394.620 kb on + strand, within LU632_RS07390 at 1394.621 kb on - strand, within LU632_RS07390 at 1395.215 kb on + strand, within LU632_RS07395 at 1395.252 kb on - strand, within LU632_RS07395 at 1395.331 kb on + strand, within LU632_RS07395 at 1395.405 kb on - strand, within LU632_RS07395 at 1395.405 kb on - strand, within LU632_RS07395 at 1395.644 kb on + strand at 1395.644 kb on + strand at 1395.645 kb on - strand at 1395.694 kb on + strand at 1395.694 kb on + strand at 1395.725 kb on - strand at 1395.746 kb on + strand, within LU632_RS07400 at 1395.901 kb on + strand, within LU632_RS07400 at 1395.901 kb on + strand, within LU632_RS07400 at 1395.901 kb on + strand, within LU632_RS07400 at 1395.902 kb on - strand, within LU632_RS07400 at 1395.931 kb on + strand, within LU632_RS07400 at 1396.021 kb on - strand, within LU632_RS07400
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,393,160 + +0.1 1,393,488 + LU632_RS07385 0.23 -0.8 1,393,488 + LU632_RS07385 0.23 +0.6 1,393,489 - LU632_RS07385 0.23 -1.1 1,393,861 + LU632_RS07385 0.86 -0.9 1,394,048 - -0.2 1,394,191 + LU632_RS07390 0.13 +1.2 1,394,192 - LU632_RS07390 0.13 +0.5 1,394,192 - LU632_RS07390 0.13 +0.5 1,394,237 + LU632_RS07390 0.18 -0.7 1,394,259 + LU632_RS07390 0.20 -0.2 1,394,277 + LU632_RS07390 0.22 -0.2 1,394,277 + LU632_RS07390 0.22 -0.3 1,394,308 - LU632_RS07390 0.25 -0.3 1,394,313 + LU632_RS07390 0.25 -0.8 1,394,313 + LU632_RS07390 0.25 +0.5 1,394,313 + LU632_RS07390 0.25 -1.0 1,394,314 - LU632_RS07390 0.26 +0.7 1,394,314 - LU632_RS07390 0.26 -0.4 1,394,316 - LU632_RS07390 0.26 +0.1 1,394,316 - LU632_RS07390 0.26 -0.4 1,394,316 - LU632_RS07390 0.26 +1.9 1,394,529 + LU632_RS07390 0.48 -0.3 1,394,529 + LU632_RS07390 0.48 +0.5 1,394,529 + LU632_RS07390 0.48 +1.5 1,394,620 + LU632_RS07390 0.57 -0.1 1,394,620 + LU632_RS07390 0.57 -1.5 1,394,620 + LU632_RS07390 0.57 +0.1 1,394,620 + LU632_RS07390 0.57 +0.3 1,394,621 - LU632_RS07390 0.57 -0.2 1,395,215 + LU632_RS07395 0.25 +0.9 1,395,252 - LU632_RS07395 0.31 +0.2 1,395,331 + LU632_RS07395 0.45 +0.5 1,395,405 - LU632_RS07395 0.57 +0.3 1,395,405 - LU632_RS07395 0.57 -0.4 1,395,644 + +0.3 1,395,644 + -0.1 1,395,645 - +0.2 1,395,694 + -0.1 1,395,694 + +0.2 1,395,725 - -0.0 1,395,746 + LU632_RS07400 0.11 -0.8 1,395,901 + LU632_RS07400 0.37 +0.5 1,395,901 + LU632_RS07400 0.37 +0.7 1,395,901 + LU632_RS07400 0.37 -0.3 1,395,902 - LU632_RS07400 0.38 +0.5 1,395,931 + LU632_RS07400 0.42 -1.4 1,396,021 - LU632_RS07400 0.58 -0.3
Or see this region's nucleotide sequence