Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07210

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07200 and LU632_RS07205 are separated by 327 nucleotidesLU632_RS07205 and LU632_RS07210 are separated by 4 nucleotidesLU632_RS07210 and LU632_RS07215 are separated by 218 nucleotidesLU632_RS07215 and LU632_RS07220 are separated by 76 nucleotides LU632_RS07200: LU632_RS07200 - IS256 family transposase, at 1,364,419 to 1,365,627 _RS07200 LU632_RS07205: LU632_RS07205 - DUF6516 family protein, at 1,365,955 to 1,366,149 _RS07205 LU632_RS07210: LU632_RS07210 - transcriptional regulator, at 1,366,154 to 1,366,513 _RS07210 LU632_RS07215: LU632_RS07215 - antitermination protein Q, at 1,366,732 to 1,367,187 _RS07215 LU632_RS07220: LU632_RS07220 - hypothetical protein, at 1,367,264 to 1,367,491 _RS07220 Position (kb) 1366 1367Strain fitness (log2 ratio) -1 0 1 2at 1365.639 kb on + strandat 1365.675 kb on + strandat 1365.676 kb on - strandat 1365.676 kb on - strandat 1365.680 kb on - strandat 1365.744 kb on - strandat 1365.755 kb on - strandat 1365.766 kb on - strandat 1365.768 kb on + strandat 1365.769 kb on - strandat 1365.769 kb on - strandat 1365.783 kb on + strandat 1365.836 kb on - strandat 1365.903 kb on + strandat 1365.904 kb on - strandat 1365.944 kb on + strandat 1365.944 kb on + strandat 1365.960 kb on - strandat 1365.976 kb on + strand, within LU632_RS07205at 1365.977 kb on - strand, within LU632_RS07205at 1365.983 kb on - strand, within LU632_RS07205at 1365.995 kb on - strand, within LU632_RS07205at 1365.995 kb on - strand, within LU632_RS07205at 1366.058 kb on - strand, within LU632_RS07205at 1366.058 kb on - strand, within LU632_RS07205at 1366.058 kb on - strand, within LU632_RS07205at 1366.058 kb on - strand, within LU632_RS07205at 1366.085 kb on + strand, within LU632_RS07205at 1366.128 kb on + strand, within LU632_RS07205at 1366.128 kb on + strand, within LU632_RS07205at 1366.129 kb on - strand, within LU632_RS07205at 1366.129 kb on - strand, within LU632_RS07205at 1366.132 kb on - strandat 1366.176 kb on + strandat 1366.396 kb on - strand, within LU632_RS07210at 1366.397 kb on + strand, within LU632_RS07210at 1366.398 kb on - strand, within LU632_RS07210at 1366.398 kb on - strand, within LU632_RS07210at 1366.398 kb on - strand, within LU632_RS07210at 1366.490 kb on - strandat 1366.524 kb on + strandat 1366.542 kb on + strandat 1366.657 kb on + strandat 1366.680 kb on - strandat 1366.961 kb on + strand, within LU632_RS07215at 1366.961 kb on + strand, within LU632_RS07215at 1366.961 kb on + strand, within LU632_RS07215at 1366.965 kb on - strand, within LU632_RS07215at 1367.065 kb on + strand, within LU632_RS07215at 1367.189 kb on - strandat 1367.189 kb on - strandat 1367.358 kb on - strand, within LU632_RS07220at 1367.456 kb on + strand, within LU632_RS07220at 1367.457 kb on - strand, within LU632_RS07220at 1367.481 kb on - strandat 1367.493 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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1,365,639 + +0.5
1,365,675 + +0.4
1,365,676 - +0.2
1,365,676 - -0.1
1,365,680 - +2.0
1,365,744 - +0.0
1,365,755 - -0.0
1,365,766 - -0.2
1,365,768 + -0.7
1,365,769 - -0.0
1,365,769 - +0.1
1,365,783 + +0.1
1,365,836 - +0.1
1,365,903 + -0.1
1,365,904 - +0.2
1,365,944 + -0.6
1,365,944 + +0.2
1,365,960 - -0.2
1,365,976 + LU632_RS07205 0.11 +0.1
1,365,977 - LU632_RS07205 0.11 +0.1
1,365,983 - LU632_RS07205 0.14 +0.3
1,365,995 - LU632_RS07205 0.21 -0.4
1,365,995 - LU632_RS07205 0.21 -0.3
1,366,058 - LU632_RS07205 0.53 +1.2
1,366,058 - LU632_RS07205 0.53 +0.5
1,366,058 - LU632_RS07205 0.53 +0.2
1,366,058 - LU632_RS07205 0.53 +1.0
1,366,085 + LU632_RS07205 0.67 +0.2
1,366,128 + LU632_RS07205 0.89 +1.5
1,366,128 + LU632_RS07205 0.89 -0.7
1,366,129 - LU632_RS07205 0.89 -0.7
1,366,129 - LU632_RS07205 0.89 +0.5
1,366,132 - +0.7
1,366,176 + -0.3
1,366,396 - LU632_RS07210 0.67 -0.6
1,366,397 + LU632_RS07210 0.68 +0.5
1,366,398 - LU632_RS07210 0.68 -0.5
1,366,398 - LU632_RS07210 0.68 -0.1
1,366,398 - LU632_RS07210 0.68 +0.8
1,366,490 - +0.3
1,366,524 + +0.3
1,366,542 + +0.4
1,366,657 + -0.8
1,366,680 - -0.6
1,366,961 + LU632_RS07215 0.50 -0.6
1,366,961 + LU632_RS07215 0.50 +0.4
1,366,961 + LU632_RS07215 0.50 -0.8
1,366,965 - LU632_RS07215 0.51 +0.3
1,367,065 + LU632_RS07215 0.73 -0.2
1,367,189 - +0.6
1,367,189 - +0.3
1,367,358 - LU632_RS07220 0.41 +0.1
1,367,456 + LU632_RS07220 0.84 -0.4
1,367,457 - LU632_RS07220 0.85 -0.2
1,367,481 - +0.5
1,367,493 + +1.1

Or see this region's nucleotide sequence