Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06985

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS06970 and LU632_RS06975 are separated by 11 nucleotidesLU632_RS06975 and LU632_RS06980 are separated by 78 nucleotidesLU632_RS06980 and LU632_RS06985 are separated by 85 nucleotidesLU632_RS06985 and LU632_RS06990 are separated by 186 nucleotidesLU632_RS06990 and LU632_RS06995 are separated by 4 nucleotides LU632_RS06970: LU632_RS06970 - protease FtsH-inhibitory lysogeny factor CIII, at 1,330,873 to 1,331,004 _RS06970 LU632_RS06975: LU632_RS06975 - HNH endonuclease, at 1,331,016 to 1,331,507 _RS06975 LU632_RS06980: LU632_RS06980 - hypothetical protein, at 1,331,586 to 1,331,741 _RS06980 LU632_RS06985: LU632_RS06985 - hypothetical protein, at 1,331,827 to 1,332,180 _RS06985 LU632_RS06990: LU632_RS06990 - hypothetical protein, at 1,332,367 to 1,332,858 _RS06990 LU632_RS06995: LU632_RS06995 - hypothetical protein, at 1,332,863 to 1,333,114 _RS06995 Position (kb) 1331 1332 1333Strain fitness (log2 ratio) -1 0 1 2at 1331.110 kb on - strand, within LU632_RS06975at 1331.607 kb on + strand, within LU632_RS06980at 1331.608 kb on - strand, within LU632_RS06980at 1331.694 kb on + strand, within LU632_RS06980at 1332.060 kb on + strand, within LU632_RS06985at 1332.228 kb on - strandat 1332.301 kb on - strandat 1332.415 kb on + strandat 1332.416 kb on - strandat 1332.493 kb on + strand, within LU632_RS06990at 1332.524 kb on - strand, within LU632_RS06990at 1332.559 kb on + strand, within LU632_RS06990at 1332.591 kb on - strand, within LU632_RS06990at 1332.711 kb on + strand, within LU632_RS06990at 1332.712 kb on - strand, within LU632_RS06990at 1332.959 kb on - strand, within LU632_RS06995at 1332.970 kb on + strand, within LU632_RS06995at 1333.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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1,331,110 - LU632_RS06975 0.19 -1.7
1,331,607 + LU632_RS06980 0.13 -0.2
1,331,608 - LU632_RS06980 0.14 -0.4
1,331,694 + LU632_RS06980 0.69 +0.8
1,332,060 + LU632_RS06985 0.66 -1.3
1,332,228 - -0.4
1,332,301 - +0.2
1,332,415 + -0.1
1,332,416 - -0.6
1,332,493 + LU632_RS06990 0.26 +0.6
1,332,524 - LU632_RS06990 0.32 +0.5
1,332,559 + LU632_RS06990 0.39 -0.5
1,332,591 - LU632_RS06990 0.46 +0.6
1,332,711 + LU632_RS06990 0.70 +0.2
1,332,712 - LU632_RS06990 0.70 -0.4
1,332,959 - LU632_RS06995 0.38 +0.6
1,332,970 + LU632_RS06995 0.42 +1.9
1,333,103 - +0.3

Or see this region's nucleotide sequence