Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06965

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS06950 and LU632_RS06955 overlap by 4 nucleotidesLU632_RS06955 and LU632_RS06960 are separated by 9 nucleotidesLU632_RS06960 and LU632_RS06965 are separated by 20 nucleotidesLU632_RS06965 and LU632_RS06970 are separated by 312 nucleotidesLU632_RS06970 and LU632_RS06975 are separated by 11 nucleotides LU632_RS06950: LU632_RS06950 - hypothetical protein, at 1,328,472 to 1,329,047 _RS06950 LU632_RS06955: LU632_RS06955 - hypothetical protein, at 1,329,044 to 1,329,625 _RS06955 LU632_RS06960: LU632_RS06960 - hypothetical protein, at 1,329,635 to 1,329,904 _RS06960 LU632_RS06965: LU632_RS06965 - ERF family protein, at 1,329,925 to 1,330,560 _RS06965 LU632_RS06970: LU632_RS06970 - protease FtsH-inhibitory lysogeny factor CIII, at 1,330,873 to 1,331,004 _RS06970 LU632_RS06975: LU632_RS06975 - HNH endonuclease, at 1,331,016 to 1,331,507 _RS06975 Position (kb) 1329 1330 1331Strain fitness (log2 ratio) -1 0 1at 1328.960 kb on + strand, within LU632_RS06950at 1329.109 kb on + strand, within LU632_RS06955at 1329.233 kb on + strand, within LU632_RS06955at 1329.343 kb on - strand, within LU632_RS06955at 1329.899 kb on - strandat 1329.899 kb on - strandat 1329.899 kb on - strandat 1329.899 kb on - strandat 1329.899 kb on - strandat 1330.347 kb on + strand, within LU632_RS06965at 1330.371 kb on - strand, within LU632_RS06965at 1330.371 kb on - strand, within LU632_RS06965at 1330.371 kb on - strand, within LU632_RS06965at 1330.391 kb on - strand, within LU632_RS06965at 1330.470 kb on - strand, within LU632_RS06965at 1330.470 kb on - strand, within LU632_RS06965at 1330.470 kb on - strand, within LU632_RS06965at 1331.110 kb on - strand, within LU632_RS06975

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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1,328,960 + LU632_RS06950 0.85 -0.2
1,329,109 + LU632_RS06955 0.11 +0.1
1,329,233 + LU632_RS06955 0.32 +0.0
1,329,343 - LU632_RS06955 0.51 -0.7
1,329,899 - -1.0
1,329,899 - -0.2
1,329,899 - -0.8
1,329,899 - -1.0
1,329,899 - +0.3
1,330,347 + LU632_RS06965 0.66 -0.7
1,330,371 - LU632_RS06965 0.70 -1.1
1,330,371 - LU632_RS06965 0.70 -1.0
1,330,371 - LU632_RS06965 0.70 +0.4
1,330,391 - LU632_RS06965 0.73 -0.8
1,330,470 - LU632_RS06965 0.86 +0.2
1,330,470 - LU632_RS06965 0.86 -0.7
1,330,470 - LU632_RS06965 0.86 -0.1
1,331,110 - LU632_RS06975 0.19 -1.7

Or see this region's nucleotide sequence