Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06400

Experiment: HBM-CucXylem

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	HBM-CucXylem
1,228,552	-	queE	LU632_RS06390	0.55	+1.5
1,228,552	-	queE	LU632_RS06390	0.55	+1.5
1,228,602	+	queE	LU632_RS06390	0.62	+0.2
1,228,603	-	queE	LU632_RS06390	0.62	+1.0
1,228,603	-	queE	LU632_RS06390	0.62	+0.5
1,228,655	+	queE	LU632_RS06390	0.70	+0.6
1,228,655	+	queE	LU632_RS06390	0.70	-1.0
1,228,656	-	queE	LU632_RS06390	0.70	-0.1
1,228,786	-	queE	LU632_RS06390	0.90	+0.5
1,228,806	+				-0.3
1,228,834	-				-0.2
1,228,837	+				-0.0
1,228,842	+				+0.5
1,228,843	-				-0.8
1,228,845	+				-0.5
1,228,845	+				-0.9
1,229,009	-	queD	LU632_RS06395	0.38	+0.9
1,229,019	+	queD	LU632_RS06395	0.41	+1.0
1,229,019	+	queD	LU632_RS06395	0.41	-0.1
1,229,019	+	queD	LU632_RS06395	0.41	-2.5
1,229,020	-	queD	LU632_RS06395	0.41	+1.5
1,229,020	-	queD	LU632_RS06395	0.41	+0.0
1,229,020	-	queD	LU632_RS06395	0.41	+0.2
1,229,020	-	queD	LU632_RS06395	0.41	-0.2
1,229,020	-	queD	LU632_RS06395	0.41	-0.0
1,229,040	+	queD	LU632_RS06395	0.47	+0.7
1,229,040	+	queD	LU632_RS06395	0.47	+0.5
1,229,040	+	queD	LU632_RS06395	0.47	-0.7
1,229,040	+	queD	LU632_RS06395	0.47	-1.3
1,229,041	-	queD	LU632_RS06395	0.47	+1.9
1,229,043	-	queD	LU632_RS06395	0.47	-0.5
1,229,131	+	queD	LU632_RS06395	0.72	-0.0
1,229,132	-	queD	LU632_RS06395	0.72	-1.2
1,229,162	-	queD	LU632_RS06395	0.80	+0.2
1,229,162	-	queD	LU632_RS06395	0.80	-0.0
1,229,219	+				-0.7
1,229,396	-				-1.6
1,229,435	+				+0.1
1,229,451	+				-0.0
1,229,465	+				+0.3
1,229,466	-				-1.0
1,229,653	+				+0.1
1,229,653	+				-1.7
1,229,654	-				-0.9
1,229,724	-	cysJ	LU632_RS06400	0.10	+1.1
1,229,784	-	cysJ	LU632_RS06400	0.14	-1.8
1,229,799	+	cysJ	LU632_RS06400	0.14	-0.3
1,229,800	-	cysJ	LU632_RS06400	0.15	-1.3
1,229,829	+	cysJ	LU632_RS06400	0.16	-0.4
1,229,998	+	cysJ	LU632_RS06400	0.26	+0.5
1,230,282	+	cysJ	LU632_RS06400	0.41	+0.5
1,230,282	+	cysJ	LU632_RS06400	0.41	-2.2
1,230,340	+	cysJ	LU632_RS06400	0.45	-1.4
1,230,370	+	cysJ	LU632_RS06400	0.46	+0.5
1,230,592	+	cysJ	LU632_RS06400	0.59	-0.8
1,230,619	-	cysJ	LU632_RS06400	0.60	-0.0
1,230,619	-	cysJ	LU632_RS06400	0.60	-0.5
1,230,638	+	cysJ	LU632_RS06400	0.61	+0.2
1,230,695	-	cysJ	LU632_RS06400	0.64	-2.6
1,230,739	-	cysJ	LU632_RS06400	0.67	-0.6
1,230,841	-	cysJ	LU632_RS06400	0.73	+1.5
1,230,855	+	cysJ	LU632_RS06400	0.73	-1.8
1,230,856	-	cysJ	LU632_RS06400	0.73	-0.9
1,230,861	+	cysJ	LU632_RS06400	0.74	-0.8
1,231,051	-	cysJ	LU632_RS06400	0.84	-1.5
1,231,105	-	cysJ	LU632_RS06400	0.87	+0.5
1,231,111	+	cysJ	LU632_RS06400	0.88	-0.0
1,231,176	+				-0.0
1,231,176	+				+0.4
1,231,176	+				-0.8
1,231,177	-				-2.2
1,231,177	-				-1.9
1,231,177	-				-0.2
1,231,327	+				+1.5
1,231,413	+				+0.5
1,231,413	+				-0.7
1,231,502	+				-1.5
1,231,502	+				-1.8
1,231,503	-				-1.5
1,231,506	+	cysI	LU632_RS06405	0.10	-0.2
1,231,506	+	cysI	LU632_RS06405	0.10	-1.8
1,231,506	+	cysI	LU632_RS06405	0.10	-0.3
1,231,507	-	cysI	LU632_RS06405	0.10	+0.1
1,231,507	-	cysI	LU632_RS06405	0.10	-1.0
1,231,507	-	cysI	LU632_RS06405	0.10	+0.5
1,231,634	+	cysI	LU632_RS06405	0.18	+0.4
1,231,725	-	cysI	LU632_RS06405	0.23	+0.3
1,231,786	+	cysI	LU632_RS06405	0.26	-0.4
1,231,787	-	cysI	LU632_RS06405	0.27	-2.2
1,231,965	+	cysI	LU632_RS06405	0.37	+0.2
1,231,983	-	cysI	LU632_RS06405	0.38	+0.2
1,232,046	-	cysI	LU632_RS06405	0.42	+0.5
1,232,051	+	cysI	LU632_RS06405	0.42	-0.8
1,232,120	+	cysI	LU632_RS06405	0.46	-0.0
1,232,121	-	cysI	LU632_RS06405	0.46	-2.2
1,232,121	-	cysI	LU632_RS06405	0.46	-1.9
1,232,121	-	cysI	LU632_RS06405	0.46	-1.6
1,232,123	+	cysI	LU632_RS06405	0.46	-0.0
1,232,134	-	cysI	LU632_RS06405	0.47	-2.5
1,232,259	+	cysI	LU632_RS06405	0.54	-0.8