Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04090 and LU632_RS04095 are separated by 37 nucleotides LU632_RS04095 and LU632_RS04100 overlap by 82 nucleotides LU632_RS04100 and LU632_RS04105 are separated by 127 nucleotides
LU632_RS04090: LU632_RS04090 - IS3 family transposase, at 815,090 to 815,859
_RS04090
LU632_RS04095: LU632_RS04095 - IS1 family transposase, at 815,897 to 816,400
_RS04095
LU632_RS04100: LU632_RS04100 - IS1-like element transposase, at 816,319 to 816,594
_RS04100
LU632_RS04105: LU632_RS04105 - hypothetical protein, at 816,722 to 817,663
_RS04105
Position (kb) 816
817 Strain fitness (log2 ratio) -1
0
1
2
3 at 815.332 kb on - strand, within LU632_RS04090 at 815.429 kb on - strand, within LU632_RS04090 at 815.491 kb on + strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.517 kb on - strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.580 kb on + strand, within LU632_RS04090 at 815.588 kb on - strand, within LU632_RS04090 at 815.690 kb on + strand, within LU632_RS04090 at 815.755 kb on - strand, within LU632_RS04090 at 815.828 kb on + strand at 815.828 kb on + strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 815.829 kb on - strand at 816.619 kb on + strand at 816.651 kb on + strand at 816.652 kb on - strand at 816.654 kb on + strand at 816.654 kb on + strand at 816.655 kb on - strand at 816.655 kb on - strand at 816.655 kb on - strand at 816.756 kb on + strand at 816.779 kb on - strand at 816.856 kb on + strand, within LU632_RS04105 at 816.857 kb on - strand, within LU632_RS04105 at 816.900 kb on - strand, within LU632_RS04105 at 817.082 kb on + strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.098 kb on - strand, within LU632_RS04105 at 817.133 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.203 kb on + strand, within LU632_RS04105 at 817.204 kb on - strand, within LU632_RS04105 at 817.204 kb on - strand, within LU632_RS04105 at 817.373 kb on + strand, within LU632_RS04105 at 817.373 kb on + strand, within LU632_RS04105 at 817.374 kb on - strand, within LU632_RS04105 at 817.374 kb on - strand, within LU632_RS04105 at 817.393 kb on + strand, within LU632_RS04105 at 817.405 kb on + strand, within LU632_RS04105 at 817.405 kb on + strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.406 kb on - strand, within LU632_RS04105 at 817.463 kb on + strand, within LU632_RS04105 at 817.527 kb on - strand, within LU632_RS04105 at 817.553 kb on - strand, within LU632_RS04105 at 817.553 kb on - strand, within LU632_RS04105 at 817.564 kb on - strand, within LU632_RS04105
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 815,332 - LU632_RS04090 0.31 -1.4 815,429 - LU632_RS04090 0.44 +0.6 815,491 + LU632_RS04090 0.52 -0.9 815,517 - LU632_RS04090 0.55 -1.2 815,517 - LU632_RS04090 0.55 +0.8 815,517 - LU632_RS04090 0.55 +0.5 815,580 + LU632_RS04090 0.64 -0.1 815,580 + LU632_RS04090 0.64 +0.4 815,580 + LU632_RS04090 0.64 -0.1 815,588 - LU632_RS04090 0.65 +0.9 815,690 + LU632_RS04090 0.78 +0.0 815,755 - LU632_RS04090 0.86 +0.3 815,828 + +0.4 815,828 + +0.0 815,829 - +0.6 815,829 - +0.4 815,829 - -0.6 815,829 - +0.4 816,619 + -0.2 816,651 + +0.2 816,652 - +0.4 816,654 + +0.0 816,654 + -0.8 816,655 - -0.3 816,655 - -0.2 816,655 - +0.8 816,756 + -1.0 816,779 - +0.6 816,856 + LU632_RS04105 0.14 -1.6 816,857 - LU632_RS04105 0.14 -0.7 816,900 - LU632_RS04105 0.19 +0.3 817,082 + LU632_RS04105 0.38 -0.6 817,098 - LU632_RS04105 0.40 -0.3 817,098 - LU632_RS04105 0.40 +1.6 817,098 - LU632_RS04105 0.40 +0.6 817,133 + LU632_RS04105 0.44 +0.8 817,203 + LU632_RS04105 0.51 +0.7 817,203 + LU632_RS04105 0.51 +2.2 817,203 + LU632_RS04105 0.51 -0.6 817,203 + LU632_RS04105 0.51 +2.2 817,203 + LU632_RS04105 0.51 -0.7 817,204 - LU632_RS04105 0.51 -0.0 817,204 - LU632_RS04105 0.51 -0.2 817,373 + LU632_RS04105 0.69 -0.4 817,373 + LU632_RS04105 0.69 +0.2 817,374 - LU632_RS04105 0.69 +0.8 817,374 - LU632_RS04105 0.69 -0.9 817,393 + LU632_RS04105 0.71 +0.6 817,405 + LU632_RS04105 0.73 -0.3 817,405 + LU632_RS04105 0.73 -1.0 817,406 - LU632_RS04105 0.73 +0.3 817,406 - LU632_RS04105 0.73 +2.9 817,406 - LU632_RS04105 0.73 -0.1 817,463 + LU632_RS04105 0.79 -0.1 817,527 - LU632_RS04105 0.85 -0.7 817,553 - LU632_RS04105 0.88 +0.0 817,553 - LU632_RS04105 0.88 +0.4 817,564 - LU632_RS04105 0.89 +0.8
Or see this region's nucleotide sequence