Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03060 and LU632_RS03065 overlap by 4 nucleotides LU632_RS03065 and aroP are separated by 352 nucleotides aroP and pdhR are separated by 356 nucleotides
LU632_RS03060: LU632_RS03060 - IS1 family transposase, at 624,497 to 625,000
_RS03060
LU632_RS03065: LU632_RS03065 - hypothetical protein, at 624,997 to 625,014
_RS03065
LU632_RS03070: aroP - aromatic amino acid transporter AroP, at 625,367 to 626,722
aroP
LU632_RS03075: pdhR - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 627,079 to 627,843
pdhR
Position (kb) 625
626
627 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 624.505 kb on - strand at 625.258 kb on + strand at 625.258 kb on + strand at 625.258 kb on + strand at 625.259 kb on - strand at 625.261 kb on - strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.414 kb on + strand at 625.414 kb on + strand at 625.471 kb on + strand at 625.471 kb on + strand at 625.476 kb on - strand at 625.484 kb on - strand at 625.484 kb on - strand at 625.551 kb on - strand, within aroP at 625.612 kb on + strand, within aroP at 625.674 kb on + strand, within aroP at 625.674 kb on + strand, within aroP at 625.678 kb on + strand, within aroP at 625.678 kb on + strand, within aroP at 625.679 kb on - strand, within aroP at 625.679 kb on - strand, within aroP at 625.679 kb on - strand, within aroP at 625.811 kb on - strand, within aroP at 625.828 kb on + strand, within aroP at 625.828 kb on + strand, within aroP at 625.950 kb on + strand, within aroP at 625.983 kb on + strand, within aroP at 625.984 kb on - strand, within aroP at 626.023 kb on + strand, within aroP at 626.066 kb on - strand, within aroP at 626.098 kb on + strand, within aroP at 626.098 kb on + strand, within aroP at 626.098 kb on + strand, within aroP at 626.099 kb on - strand, within aroP at 626.099 kb on - strand, within aroP at 626.099 kb on - strand, within aroP at 626.099 kb on - strand, within aroP at 626.099 kb on - strand, within aroP at 626.099 kb on - strand, within aroP at 626.131 kb on + strand, within aroP at 626.163 kb on - strand, within aroP at 626.171 kb on + strand, within aroP at 626.173 kb on + strand, within aroP at 626.174 kb on - strand, within aroP at 626.174 kb on - strand, within aroP at 626.205 kb on - strand, within aroP at 626.255 kb on - strand, within aroP at 626.321 kb on + strand, within aroP at 626.380 kb on - strand, within aroP at 626.418 kb on - strand, within aroP at 626.433 kb on + strand, within aroP at 626.472 kb on + strand, within aroP at 626.477 kb on - strand, within aroP at 626.477 kb on - strand, within aroP at 626.575 kb on - strand, within aroP at 626.722 kb on + strand at 626.722 kb on + strand at 626.722 kb on + strand at 626.723 kb on - strand at 626.723 kb on - strand at 626.724 kb on + strand at 626.724 kb on + strand at 626.724 kb on + strand at 626.725 kb on - strand at 626.725 kb on - strand at 626.726 kb on + strand at 626.727 kb on - strand at 626.857 kb on + strand at 626.929 kb on + strand at 626.929 kb on + strand at 626.934 kb on + strand at 626.935 kb on - strand at 626.985 kb on + strand at 626.987 kb on + strand at 626.987 kb on + strand at 626.987 kb on + strand at 626.988 kb on - strand at 627.010 kb on + strand at 627.230 kb on + strand, within pdhR at 627.405 kb on + strand, within pdhR at 627.418 kb on + strand, within pdhR at 627.418 kb on + strand, within pdhR at 627.418 kb on + strand, within pdhR at 627.428 kb on + strand, within pdhR at 627.428 kb on + strand, within pdhR at 627.428 kb on + strand, within pdhR at 627.564 kb on + strand, within pdhR at 627.564 kb on + strand, within pdhR at 627.564 kb on + strand, within pdhR
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 624,505 - +0.2 625,258 + +0.5 625,258 + -0.6 625,258 + -1.0 625,259 - +0.2 625,261 - -0.9 625,323 + -0.4 625,323 + +0.5 625,323 + -0.4 625,323 + -1.5 625,324 - -0.3 625,324 - +1.2 625,324 - +0.7 625,324 - +0.2 625,324 - +0.0 625,414 + +0.2 625,414 + +0.4 625,471 + +0.7 625,471 + +0.1 625,476 - +0.7 625,484 - +0.5 625,484 - +0.2 625,551 - aroP LU632_RS03070 0.14 +1.1 625,612 + aroP LU632_RS03070 0.18 -1.5 625,674 + aroP LU632_RS03070 0.23 -0.0 625,674 + aroP LU632_RS03070 0.23 +0.7 625,678 + aroP LU632_RS03070 0.23 +0.0 625,678 + aroP LU632_RS03070 0.23 +0.7 625,679 - aroP LU632_RS03070 0.23 +0.7 625,679 - aroP LU632_RS03070 0.23 -0.6 625,679 - aroP LU632_RS03070 0.23 -0.6 625,811 - aroP LU632_RS03070 0.33 -0.6 625,828 + aroP LU632_RS03070 0.34 -0.2 625,828 + aroP LU632_RS03070 0.34 -1.3 625,950 + aroP LU632_RS03070 0.43 +0.4 625,983 + aroP LU632_RS03070 0.45 +0.4 625,984 - aroP LU632_RS03070 0.46 +0.3 626,023 + aroP LU632_RS03070 0.48 -0.2 626,066 - aroP LU632_RS03070 0.52 +0.3 626,098 + aroP LU632_RS03070 0.54 +0.4 626,098 + aroP LU632_RS03070 0.54 +0.6 626,098 + aroP LU632_RS03070 0.54 +1.3 626,099 - aroP LU632_RS03070 0.54 -0.2 626,099 - aroP LU632_RS03070 0.54 -0.0 626,099 - aroP LU632_RS03070 0.54 +0.6 626,099 - aroP LU632_RS03070 0.54 +0.4 626,099 - aroP LU632_RS03070 0.54 +0.8 626,099 - aroP LU632_RS03070 0.54 +0.6 626,131 + aroP LU632_RS03070 0.56 -0.0 626,163 - aroP LU632_RS03070 0.59 -1.2 626,171 + aroP LU632_RS03070 0.59 -0.6 626,173 + aroP LU632_RS03070 0.59 +0.1 626,174 - aroP LU632_RS03070 0.60 +0.2 626,174 - aroP LU632_RS03070 0.60 +0.7 626,205 - aroP LU632_RS03070 0.62 +0.7 626,255 - aroP LU632_RS03070 0.65 +0.0 626,321 + aroP LU632_RS03070 0.70 -0.2 626,380 - aroP LU632_RS03070 0.75 +0.4 626,418 - aroP LU632_RS03070 0.78 -0.4 626,433 + aroP LU632_RS03070 0.79 -0.7 626,472 + aroP LU632_RS03070 0.81 -0.5 626,477 - aroP LU632_RS03070 0.82 +0.4 626,477 - aroP LU632_RS03070 0.82 +0.4 626,575 - aroP LU632_RS03070 0.89 -0.0 626,722 + +0.2 626,722 + +0.1 626,722 + -0.2 626,723 - +0.1 626,723 - +0.7 626,724 + +0.2 626,724 + -0.1 626,724 + +0.0 626,725 - -0.2 626,725 - -0.8 626,726 + +1.1 626,727 - +1.7 626,857 + +0.0 626,929 + +0.5 626,929 + +0.1 626,934 + -0.5 626,935 - -1.9 626,985 + -0.4 626,987 + -0.5 626,987 + +0.7 626,987 + +0.7 626,988 - -1.3 627,010 + +0.7 627,230 + pdhR LU632_RS03075 0.20 -0.4 627,405 + pdhR LU632_RS03075 0.43 +0.3 627,418 + pdhR LU632_RS03075 0.44 +0.9 627,418 + pdhR LU632_RS03075 0.44 -0.3 627,418 + pdhR LU632_RS03075 0.44 +3.3 627,428 + pdhR LU632_RS03075 0.46 +1.5 627,428 + pdhR LU632_RS03075 0.46 +0.7 627,428 + pdhR LU632_RS03075 0.46 -0.1 627,564 + pdhR LU632_RS03075 0.63 +1.5 627,564 + pdhR LU632_RS03075 0.63 +1.3 627,564 + pdhR LU632_RS03075 0.63 +1.5
Or see this region's nucleotide sequence