Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt leuB and leuA are separated by 2 nucleotides leuA and ilvI are separated by 902 nucleotides
LU632_RS02875: leuB - 3-isopropylmalate dehydrogenase, at 584,552 to 585,640
leuB
LU632_RS02880: leuA - 2-isopropylmalate synthase, at 585,643 to 587,211
leuA
LU632_RS02885: ilvI - acetolactate synthase 3 large subunit, at 588,114 to 589,838
ilvI
Position (kb) 585
586
587
588 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 584.707 kb on + strand, within leuB at 584.720 kb on + strand, within leuB at 584.721 kb on - strand, within leuB at 584.965 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.967 kb on + strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 584.968 kb on - strand, within leuB at 585.119 kb on - strand, within leuB at 585.207 kb on + strand, within leuB at 585.208 kb on - strand, within leuB at 585.208 kb on - strand, within leuB at 585.460 kb on + strand, within leuB at 585.622 kb on + strand at 585.622 kb on + strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.623 kb on - strand at 585.627 kb on + strand at 585.627 kb on + strand at 585.627 kb on + strand at 585.628 kb on - strand at 585.649 kb on + strand at 585.650 kb on - strand at 585.761 kb on - strand at 585.761 kb on - strand at 585.763 kb on - strand at 585.803 kb on + strand, within leuA at 585.803 kb on + strand, within leuA at 585.804 kb on - strand, within leuA at 585.820 kb on + strand, within leuA at 585.867 kb on - strand, within leuA at 585.882 kb on + strand, within leuA at 586.001 kb on - strand, within leuA at 586.103 kb on - strand, within leuA at 586.142 kb on + strand, within leuA at 586.142 kb on + strand, within leuA at 586.160 kb on + strand, within leuA at 586.160 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.173 kb on + strand, within leuA at 586.175 kb on + strand, within leuA at 586.191 kb on + strand, within leuA at 586.301 kb on - strand, within leuA at 586.371 kb on + strand, within leuA at 586.462 kb on + strand, within leuA at 586.462 kb on + strand, within leuA at 586.463 kb on - strand, within leuA at 586.531 kb on - strand, within leuA at 586.592 kb on - strand, within leuA at 586.605 kb on + strand, within leuA at 586.673 kb on + strand, within leuA at 586.692 kb on - strand, within leuA at 586.710 kb on + strand, within leuA at 586.710 kb on + strand, within leuA at 586.711 kb on + strand, within leuA at 586.711 kb on - strand, within leuA at 586.711 kb on - strand, within leuA at 586.711 kb on - strand, within leuA at 586.817 kb on + strand, within leuA at 586.818 kb on - strand, within leuA at 586.921 kb on - strand, within leuA at 586.971 kb on + strand, within leuA at 586.972 kb on - strand, within leuA at 587.032 kb on - strand, within leuA at 587.032 kb on - strand, within leuA at 587.092 kb on + strand at 587.093 kb on - strand at 587.093 kb on - strand at 587.198 kb on - strand at 587.348 kb on + strand at 587.351 kb on + strand at 587.351 kb on + strand at 587.355 kb on - strand at 587.461 kb on + strand at 587.463 kb on + strand at 587.463 kb on + strand at 587.464 kb on - strand at 587.464 kb on - strand at 587.464 kb on - strand at 587.464 kb on - strand at 587.464 kb on - strand at 587.569 kb on - strand at 587.605 kb on + strand at 587.682 kb on - strand at 587.736 kb on + strand at 587.736 kb on + strand at 587.737 kb on - strand at 587.737 kb on - strand at 587.799 kb on + strand at 587.831 kb on + strand at 587.832 kb on - strand at 587.832 kb on - strand at 587.832 kb on - strand at 587.836 kb on - strand at 587.933 kb on - strand at 588.066 kb on - strand at 588.074 kb on + strand at 588.075 kb on - strand at 588.178 kb on + strand at 588.178 kb on + strand at 588.179 kb on - strand at 588.211 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 584,707 + leuB LU632_RS02875 0.14 -1.4 584,720 + leuB LU632_RS02875 0.15 -1.7 584,721 - leuB LU632_RS02875 0.16 -2.8 584,965 + leuB LU632_RS02875 0.38 -1.6 584,967 + leuB LU632_RS02875 0.38 -1.7 584,967 + leuB LU632_RS02875 0.38 +0.7 584,967 + leuB LU632_RS02875 0.38 +0.1 584,967 + leuB LU632_RS02875 0.38 -0.5 584,967 + leuB LU632_RS02875 0.38 -1.8 584,967 + leuB LU632_RS02875 0.38 -3.0 584,967 + leuB LU632_RS02875 0.38 -1.3 584,967 + leuB LU632_RS02875 0.38 -1.7 584,967 + leuB LU632_RS02875 0.38 -2.0 584,967 + leuB LU632_RS02875 0.38 -1.8 584,967 + leuB LU632_RS02875 0.38 -1.3 584,967 + leuB LU632_RS02875 0.38 -1.1 584,967 + leuB LU632_RS02875 0.38 -1.9 584,967 + leuB LU632_RS02875 0.38 -2.0 584,968 - leuB LU632_RS02875 0.38 +0.1 584,968 - leuB LU632_RS02875 0.38 -0.2 584,968 - leuB LU632_RS02875 0.38 -3.5 584,968 - leuB LU632_RS02875 0.38 -2.9 584,968 - leuB LU632_RS02875 0.38 -2.0 584,968 - leuB LU632_RS02875 0.38 -3.2 584,968 - leuB LU632_RS02875 0.38 -2.1 584,968 - leuB LU632_RS02875 0.38 +0.1 584,968 - leuB LU632_RS02875 0.38 -0.9 584,968 - leuB LU632_RS02875 0.38 -1.5 584,968 - leuB LU632_RS02875 0.38 -1.6 584,968 - leuB LU632_RS02875 0.38 +1.7 584,968 - leuB LU632_RS02875 0.38 -2.2 584,968 - leuB LU632_RS02875 0.38 -1.5 585,119 - leuB LU632_RS02875 0.52 +0.5 585,207 + leuB LU632_RS02875 0.60 -2.6 585,208 - leuB LU632_RS02875 0.60 -1.9 585,208 - leuB LU632_RS02875 0.60 -0.6 585,460 + leuB LU632_RS02875 0.83 -0.9 585,622 + -1.8 585,622 + -0.5 585,623 - +0.4 585,623 - -3.5 585,623 - -0.5 585,627 + -2.7 585,627 + -2.3 585,627 + -1.5 585,628 - -2.8 585,649 + -1.9 585,650 - -0.8 585,761 - -0.5 585,761 - +0.7 585,763 - -1.3 585,803 + leuA LU632_RS02880 0.10 -2.1 585,803 + leuA LU632_RS02880 0.10 -1.0 585,804 - leuA LU632_RS02880 0.10 +0.7 585,820 + leuA LU632_RS02880 0.11 -1.7 585,867 - leuA LU632_RS02880 0.14 +0.7 585,882 + leuA LU632_RS02880 0.15 -1.0 586,001 - leuA LU632_RS02880 0.23 +0.5 586,103 - leuA LU632_RS02880 0.29 -1.6 586,142 + leuA LU632_RS02880 0.32 -1.5 586,142 + leuA LU632_RS02880 0.32 -1.4 586,160 + leuA LU632_RS02880 0.33 -1.3 586,160 + leuA LU632_RS02880 0.33 -2.0 586,173 + leuA LU632_RS02880 0.34 -2.7 586,173 + leuA LU632_RS02880 0.34 -0.8 586,173 + leuA LU632_RS02880 0.34 -0.6 586,173 + leuA LU632_RS02880 0.34 -2.5 586,175 + leuA LU632_RS02880 0.34 -2.8 586,191 + leuA LU632_RS02880 0.35 -0.6 586,301 - leuA LU632_RS02880 0.42 -2.3 586,371 + leuA LU632_RS02880 0.46 -2.9 586,462 + leuA LU632_RS02880 0.52 -1.8 586,462 + leuA LU632_RS02880 0.52 -1.9 586,463 - leuA LU632_RS02880 0.52 -1.5 586,531 - leuA LU632_RS02880 0.57 -0.6 586,592 - leuA LU632_RS02880 0.60 -3.3 586,605 + leuA LU632_RS02880 0.61 -0.3 586,673 + leuA LU632_RS02880 0.66 -1.9 586,692 - leuA LU632_RS02880 0.67 -1.7 586,710 + leuA LU632_RS02880 0.68 -1.6 586,710 + leuA LU632_RS02880 0.68 -2.1 586,711 + leuA LU632_RS02880 0.68 -1.8 586,711 - leuA LU632_RS02880 0.68 -0.6 586,711 - leuA LU632_RS02880 0.68 -2.1 586,711 - leuA LU632_RS02880 0.68 -2.1 586,817 + leuA LU632_RS02880 0.75 -0.6 586,818 - leuA LU632_RS02880 0.75 -3.0 586,921 - leuA LU632_RS02880 0.81 +1.1 586,971 + leuA LU632_RS02880 0.85 -2.4 586,972 - leuA LU632_RS02880 0.85 -0.6 587,032 - leuA LU632_RS02880 0.89 -2.4 587,032 - leuA LU632_RS02880 0.89 -2.2 587,092 + -1.8 587,093 - -1.9 587,093 - -0.9 587,198 - -2.8 587,348 + -1.7 587,351 + -1.1 587,351 + -1.7 587,355 - +0.9 587,461 + -0.3 587,463 + +0.5 587,463 + -0.9 587,464 - -0.5 587,464 - -1.3 587,464 - -1.2 587,464 - -0.2 587,464 - +0.3 587,569 - -0.5 587,605 + -0.3 587,682 - -0.2 587,736 + +0.1 587,736 + -1.2 587,737 - -1.1 587,737 - -0.6 587,799 + +0.3 587,831 + +0.3 587,832 - -1.1 587,832 - +0.7 587,832 - -0.8 587,836 - +0.5 587,933 - -0.4 588,066 - -0.5 588,074 + -0.2 588,075 - -0.4 588,178 + -0.4 588,178 + +0.2 588,179 - +0.3 588,211 + -0.3
Or see this region's nucleotide sequence