Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02855 and LU632_RS02860 are separated by 319 nucleotides LU632_RS02860 and leuD are separated by 44 nucleotides leuD and leuC are separated by 9 nucleotides
LU632_RS02855: LU632_RS02855 - hypothetical protein, at 581,631 to 581,990
_RS02855
LU632_RS02860: LU632_RS02860 - hypothetical protein, at 582,310 to 582,480
_RS02860
LU632_RS02865: leuD - 3-isopropylmalate dehydratase small subunit, at 582,525 to 583,130
leuD
LU632_RS02870: leuC - 3-isopropylmalate dehydratase large subunit, at 583,140 to 584,549
leuC
Position (kb) 582
583
584 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 581.530 kb on - strand at 581.530 kb on - strand at 581.583 kb on + strand at 581.583 kb on + strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.584 kb on - strand at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.822 kb on + strand, within LU632_RS02855 at 581.906 kb on + strand, within LU632_RS02855 at 581.907 kb on - strand, within LU632_RS02855 at 581.912 kb on + strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 581.913 kb on - strand, within LU632_RS02855 at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.018 kb on + strand at 582.019 kb on - strand at 582.024 kb on + strand at 582.024 kb on + strand at 582.025 kb on - strand at 582.197 kb on + strand at 582.224 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.261 kb on + strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.262 kb on - strand at 582.314 kb on + strand at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.397 kb on + strand, within LU632_RS02860 at 582.408 kb on - strand, within LU632_RS02860 at 582.427 kb on - strand, within LU632_RS02860 at 582.479 kb on - strand at 582.520 kb on + strand at 582.596 kb on + strand, within leuD at 582.596 kb on + strand, within leuD at 582.675 kb on - strand, within leuD at 582.675 kb on - strand, within leuD at 582.759 kb on + strand, within leuD at 582.760 kb on - strand, within leuD at 582.795 kb on - strand, within leuD at 582.912 kb on - strand, within leuD at 582.912 kb on - strand, within leuD at 582.941 kb on + strand, within leuD at 582.941 kb on + strand, within leuD at 582.942 kb on - strand, within leuD at 582.997 kb on + strand, within leuD at 582.998 kb on - strand, within leuD at 583.056 kb on - strand, within leuD at 583.141 kb on + strand at 583.141 kb on + strand at 583.310 kb on + strand, within leuC at 583.466 kb on + strand, within leuC at 583.499 kb on + strand, within leuC at 583.500 kb on - strand, within leuC at 583.511 kb on + strand, within leuC at 583.524 kb on - strand, within leuC at 583.577 kb on + strand, within leuC at 583.577 kb on + strand, within leuC at 583.578 kb on - strand, within leuC at 583.579 kb on + strand, within leuC at 583.612 kb on - strand, within leuC at 583.643 kb on + strand, within leuC at 583.643 kb on + strand, within leuC at 583.644 kb on - strand, within leuC at 583.689 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.892 kb on + strand, within leuC at 583.893 kb on - strand, within leuC at 583.893 kb on - strand, within leuC at 583.893 kb on - strand, within leuC at 583.896 kb on + strand, within leuC at 583.897 kb on - strand, within leuC at 583.953 kb on + strand, within leuC at 583.953 kb on + strand, within leuC at 583.953 kb on + strand, within leuC at 583.954 kb on - strand, within leuC at 583.954 kb on - strand, within leuC at 583.954 kb on - strand, within leuC at 584.007 kb on - strand, within leuC at 584.042 kb on + strand, within leuC at 584.118 kb on - strand, within leuC
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 581,530 - -0.7 581,530 - -1.6 581,583 + -0.3 581,583 + +0.3 581,584 - +1.1 581,584 - +0.3 581,584 - +1.3 581,584 - +0.0 581,822 + LU632_RS02855 0.53 -0.3 581,822 + LU632_RS02855 0.53 +0.4 581,822 + LU632_RS02855 0.53 +1.3 581,822 + LU632_RS02855 0.53 -0.2 581,906 + LU632_RS02855 0.76 +0.7 581,907 - LU632_RS02855 0.77 -0.1 581,912 + LU632_RS02855 0.78 +1.7 581,913 - LU632_RS02855 0.78 +0.1 581,913 - LU632_RS02855 0.78 -0.7 582,018 + +0.6 582,018 + +0.7 582,018 + +0.0 582,018 + +0.4 582,019 - -1.1 582,024 + -0.7 582,024 + +0.2 582,025 - +1.0 582,197 + +1.1 582,224 + -0.3 582,261 + -0.0 582,261 + -0.2 582,261 + +0.4 582,261 + -1.0 582,262 - -0.4 582,262 - -1.0 582,262 - -1.4 582,262 - +0.5 582,314 + -0.9 582,397 + LU632_RS02860 0.51 +1.0 582,397 + LU632_RS02860 0.51 -0.1 582,397 + LU632_RS02860 0.51 +0.7 582,397 + LU632_RS02860 0.51 -0.2 582,408 - LU632_RS02860 0.57 -0.6 582,427 - LU632_RS02860 0.68 -1.0 582,479 - -0.9 582,520 + +0.4 582,596 + leuD LU632_RS02865 0.12 -2.7 582,596 + leuD LU632_RS02865 0.12 -1.8 582,675 - leuD LU632_RS02865 0.25 -1.5 582,675 - leuD LU632_RS02865 0.25 -2.9 582,759 + leuD LU632_RS02865 0.39 -2.0 582,760 - leuD LU632_RS02865 0.39 -1.1 582,795 - leuD LU632_RS02865 0.45 -0.9 582,912 - leuD LU632_RS02865 0.64 +1.7 582,912 - leuD LU632_RS02865 0.64 -3.2 582,941 + leuD LU632_RS02865 0.69 -1.8 582,941 + leuD LU632_RS02865 0.69 -1.4 582,942 - leuD LU632_RS02865 0.69 -1.3 582,997 + leuD LU632_RS02865 0.78 -2.7 582,998 - leuD LU632_RS02865 0.78 -0.3 583,056 - leuD LU632_RS02865 0.88 -0.6 583,141 + -1.1 583,141 + -0.8 583,310 + leuC LU632_RS02870 0.12 -1.4 583,466 + leuC LU632_RS02870 0.23 -1.1 583,499 + leuC LU632_RS02870 0.25 -1.1 583,500 - leuC LU632_RS02870 0.26 +1.4 583,511 + leuC LU632_RS02870 0.26 -1.5 583,524 - leuC LU632_RS02870 0.27 -0.0 583,577 + leuC LU632_RS02870 0.31 -1.9 583,577 + leuC LU632_RS02870 0.31 -1.9 583,578 - leuC LU632_RS02870 0.31 +0.1 583,579 + leuC LU632_RS02870 0.31 -1.7 583,612 - leuC LU632_RS02870 0.33 -2.5 583,643 + leuC LU632_RS02870 0.36 -1.5 583,643 + leuC LU632_RS02870 0.36 -0.2 583,644 - leuC LU632_RS02870 0.36 -1.9 583,689 + leuC LU632_RS02870 0.39 -1.1 583,892 + leuC LU632_RS02870 0.53 -1.5 583,892 + leuC LU632_RS02870 0.53 -1.4 583,892 + leuC LU632_RS02870 0.53 -1.8 583,892 + leuC LU632_RS02870 0.53 -0.9 583,892 + leuC LU632_RS02870 0.53 -2.0 583,893 - leuC LU632_RS02870 0.53 -2.4 583,893 - leuC LU632_RS02870 0.53 -1.4 583,893 - leuC LU632_RS02870 0.53 -1.1 583,896 + leuC LU632_RS02870 0.54 -1.3 583,897 - leuC LU632_RS02870 0.54 -0.5 583,953 + leuC LU632_RS02870 0.58 -2.4 583,953 + leuC LU632_RS02870 0.58 +0.1 583,953 + leuC LU632_RS02870 0.58 -1.3 583,954 - leuC LU632_RS02870 0.58 -1.8 583,954 - leuC LU632_RS02870 0.58 -4.0 583,954 - leuC LU632_RS02870 0.58 -0.3 584,007 - leuC LU632_RS02870 0.61 -1.7 584,042 + leuC LU632_RS02870 0.64 +1.7 584,118 - leuC LU632_RS02870 0.69 -2.1
Or see this region's nucleotide sequence