Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02510 and deoC are separated by 274 nucleotides deoC and LU632_RS02520 are separated by 15 nucleotides LU632_RS02520 and deoB are separated by 79 nucleotides
LU632_RS02510: LU632_RS02510 - TatD family hydrolase, at 498,339 to 499,115
_RS02510
LU632_RS02515: deoC - deoxyribose-phosphate aldolase, at 499,390 to 500,169
deoC
LU632_RS02520: LU632_RS02520 - thymidine phosphorylase, at 500,185 to 501,027
_RS02520
LU632_RS02525: deoB - phosphopentomutase, at 501,107 to 502,330
deoB
Position (kb) 499
500
501 Strain fitness (log2 ratio) -1
0
1 at 498.516 kb on + strand, within LU632_RS02510 at 498.555 kb on + strand, within LU632_RS02510 at 498.588 kb on + strand, within LU632_RS02510 at 498.588 kb on + strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.589 kb on - strand, within LU632_RS02510 at 498.590 kb on + strand, within LU632_RS02510 at 498.591 kb on - strand, within LU632_RS02510 at 498.721 kb on + strand, within LU632_RS02510 at 498.722 kb on - strand, within LU632_RS02510 at 498.722 kb on - strand, within LU632_RS02510 at 498.889 kb on - strand, within LU632_RS02510 at 499.092 kb on - strand at 499.109 kb on + strand at 499.110 kb on - strand at 499.209 kb on + strand at 499.209 kb on + strand at 499.210 kb on - strand at 499.214 kb on + strand at 499.214 kb on + strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.215 kb on - strand at 499.306 kb on + strand at 499.307 kb on - strand at 499.307 kb on - strand at 499.358 kb on + strand at 499.359 kb on - strand at 499.530 kb on + strand, within deoC at 499.530 kb on + strand, within deoC at 499.531 kb on - strand, within deoC at 499.531 kb on - strand, within deoC at 499.534 kb on + strand, within deoC at 499.884 kb on + strand, within deoC at 500.053 kb on - strand, within deoC at 500.331 kb on + strand, within LU632_RS02520 at 500.331 kb on + strand, within LU632_RS02520 at 500.331 kb on + strand, within LU632_RS02520 at 500.332 kb on - strand, within LU632_RS02520 at 500.332 kb on - strand, within LU632_RS02520 at 500.403 kb on + strand, within LU632_RS02520 at 500.425 kb on + strand, within LU632_RS02520 at 500.426 kb on - strand, within LU632_RS02520 at 500.426 kb on - strand, within LU632_RS02520 at 500.429 kb on - strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.511 kb on + strand, within LU632_RS02520 at 500.857 kb on + strand, within LU632_RS02520 at 500.857 kb on + strand, within LU632_RS02520 at 500.858 kb on - strand, within LU632_RS02520 at 500.959 kb on + strand at 500.959 kb on + strand at 501.051 kb on + strand at 501.117 kb on + strand at 501.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 498,516 + LU632_RS02510 0.23 -0.2 498,555 + LU632_RS02510 0.28 -0.2 498,588 + LU632_RS02510 0.32 +0.8 498,588 + LU632_RS02510 0.32 +0.3 498,589 - LU632_RS02510 0.32 -1.5 498,589 - LU632_RS02510 0.32 +0.9 498,589 - LU632_RS02510 0.32 -0.0 498,589 - LU632_RS02510 0.32 -0.3 498,589 - LU632_RS02510 0.32 +1.2 498,590 + LU632_RS02510 0.32 +0.5 498,591 - LU632_RS02510 0.32 -0.4 498,721 + LU632_RS02510 0.49 -0.0 498,722 - LU632_RS02510 0.49 -0.6 498,722 - LU632_RS02510 0.49 -0.2 498,889 - LU632_RS02510 0.71 -0.0 499,092 - -0.3 499,109 + -0.0 499,110 - +0.5 499,209 + -0.3 499,209 + +1.1 499,210 - -0.9 499,214 + -0.5 499,214 + +0.8 499,215 - -0.3 499,215 - -0.2 499,215 - -0.9 499,306 + -0.2 499,307 - -1.1 499,307 - -0.4 499,358 + +0.2 499,359 - -0.1 499,530 + deoC LU632_RS02515 0.18 -0.2 499,530 + deoC LU632_RS02515 0.18 -0.1 499,531 - deoC LU632_RS02515 0.18 +0.0 499,531 - deoC LU632_RS02515 0.18 -1.0 499,534 + deoC LU632_RS02515 0.18 -1.2 499,884 + deoC LU632_RS02515 0.63 -1.5 500,053 - deoC LU632_RS02515 0.85 -1.3 500,331 + LU632_RS02520 0.17 -0.0 500,331 + LU632_RS02520 0.17 +0.7 500,331 + LU632_RS02520 0.17 -0.6 500,332 - LU632_RS02520 0.17 +0.8 500,332 - LU632_RS02520 0.17 +0.4 500,403 + LU632_RS02520 0.26 +0.1 500,425 + LU632_RS02520 0.28 +0.3 500,426 - LU632_RS02520 0.29 -0.0 500,426 - LU632_RS02520 0.29 -0.6 500,429 - LU632_RS02520 0.29 +1.7 500,494 + LU632_RS02520 0.37 +0.1 500,494 + LU632_RS02520 0.37 +1.2 500,494 + LU632_RS02520 0.37 +1.1 500,494 + LU632_RS02520 0.37 -0.4 500,495 - LU632_RS02520 0.37 +0.2 500,495 - LU632_RS02520 0.37 +0.4 500,495 - LU632_RS02520 0.37 -1.2 500,511 + LU632_RS02520 0.39 +0.8 500,857 + LU632_RS02520 0.80 -0.3 500,857 + LU632_RS02520 0.80 +0.4 500,858 - LU632_RS02520 0.80 -0.6 500,959 + +0.3 500,959 + -0.8 501,051 + -0.1 501,117 + -1.1 501,117 + -0.6
Or see this region's nucleotide sequence