Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pmbA and cybC are separated by 89 nucleotides cybC and LU632_RS02155 are separated by 182 nucleotides LU632_RS02155 and LU632_RS02160 are separated by 260 nucleotides
LU632_RS02145: pmbA - metalloprotease PmbA, at 425,850 to 427,190
pmbA
LU632_RS02150: cybC - cytochrome b562, at 427,280 to 427,663
cybC
LU632_RS02155: LU632_RS02155 - hypothetical protein, at 427,846 to 428,040
_RS02155
LU632_RS02160: LU632_RS02160 - hypothetical protein, at 428,301 to 428,684
_RS02160
Position (kb) 427
428 Strain fitness (log2 ratio) -2
-1
0
1
2 at 426.308 kb on + strand, within pmbA at 426.344 kb on - strand, within pmbA at 426.344 kb on - strand, within pmbA at 426.382 kb on - strand, within pmbA at 426.450 kb on + strand, within pmbA at 426.450 kb on + strand, within pmbA at 426.450 kb on + strand, within pmbA at 426.451 kb on - strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.456 kb on + strand, within pmbA at 426.457 kb on - strand, within pmbA at 426.457 kb on - strand, within pmbA at 426.457 kb on - strand, within pmbA at 426.458 kb on + strand, within pmbA at 426.458 kb on + strand, within pmbA at 426.461 kb on + strand, within pmbA at 426.527 kb on - strand, within pmbA at 426.548 kb on + strand, within pmbA at 426.548 kb on + strand, within pmbA at 426.548 kb on + strand, within pmbA at 426.630 kb on - strand, within pmbA at 426.806 kb on - strand, within pmbA at 426.884 kb on + strand, within pmbA at 427.000 kb on - strand, within pmbA at 427.140 kb on - strand at 427.207 kb on + strand at 427.210 kb on + strand at 427.210 kb on + strand at 427.210 kb on + strand at 427.214 kb on - strand at 427.264 kb on + strand at 427.387 kb on + strand, within cybC at 427.546 kb on - strand, within cybC at 427.782 kb on - strand at 427.782 kb on - strand at 427.782 kb on - strand at 428.078 kb on + strand at 428.278 kb on + strand at 428.278 kb on + strand at 428.345 kb on + strand, within LU632_RS02160 at 428.369 kb on - strand, within LU632_RS02160 at 428.369 kb on - strand, within LU632_RS02160 at 428.411 kb on - strand, within LU632_RS02160 at 428.429 kb on - strand, within LU632_RS02160 at 428.558 kb on + strand, within LU632_RS02160 at 428.559 kb on - strand, within LU632_RS02160 at 428.559 kb on - strand, within LU632_RS02160 at 428.559 kb on - strand, within LU632_RS02160 at 428.559 kb on - strand, within LU632_RS02160 at 428.638 kb on + strand, within LU632_RS02160
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 426,308 + pmbA LU632_RS02145 0.34 +0.3 426,344 - pmbA LU632_RS02145 0.37 +0.0 426,344 - pmbA LU632_RS02145 0.37 -1.2 426,382 - pmbA LU632_RS02145 0.40 +0.4 426,450 + pmbA LU632_RS02145 0.45 -0.5 426,450 + pmbA LU632_RS02145 0.45 +0.2 426,450 + pmbA LU632_RS02145 0.45 -1.6 426,451 - pmbA LU632_RS02145 0.45 -0.3 426,456 + pmbA LU632_RS02145 0.45 -0.6 426,456 + pmbA LU632_RS02145 0.45 +0.6 426,456 + pmbA LU632_RS02145 0.45 +0.0 426,456 + pmbA LU632_RS02145 0.45 +0.0 426,457 - pmbA LU632_RS02145 0.45 -0.4 426,457 - pmbA LU632_RS02145 0.45 -0.5 426,457 - pmbA LU632_RS02145 0.45 -0.1 426,458 + pmbA LU632_RS02145 0.45 -0.1 426,458 + pmbA LU632_RS02145 0.45 +0.0 426,461 + pmbA LU632_RS02145 0.46 -0.9 426,527 - pmbA LU632_RS02145 0.50 +0.2 426,548 + pmbA LU632_RS02145 0.52 -1.1 426,548 + pmbA LU632_RS02145 0.52 -2.0 426,548 + pmbA LU632_RS02145 0.52 +0.3 426,630 - pmbA LU632_RS02145 0.58 +0.3 426,806 - pmbA LU632_RS02145 0.71 +0.3 426,884 + pmbA LU632_RS02145 0.77 -0.9 427,000 - pmbA LU632_RS02145 0.86 +0.6 427,140 - -0.3 427,207 + +0.6 427,210 + +0.0 427,210 + -0.1 427,210 + -0.3 427,214 - +0.5 427,264 + -0.7 427,387 + cybC LU632_RS02150 0.28 -0.4 427,546 - cybC LU632_RS02150 0.69 -1.5 427,782 - -0.1 427,782 - -0.3 427,782 - -0.1 428,078 + -0.3 428,278 + -0.5 428,278 + +1.2 428,345 + LU632_RS02160 0.11 -0.2 428,369 - LU632_RS02160 0.18 +1.1 428,369 - LU632_RS02160 0.18 +0.0 428,411 - LU632_RS02160 0.29 +0.2 428,429 - LU632_RS02160 0.33 -0.3 428,558 + LU632_RS02160 0.67 -0.4 428,559 - LU632_RS02160 0.67 +0.1 428,559 - LU632_RS02160 0.67 -0.5 428,559 - LU632_RS02160 0.67 +0.5 428,559 - LU632_RS02160 0.67 +2.0 428,638 + LU632_RS02160 0.88 -0.7
Or see this region's nucleotide sequence