Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01815 and LU632_RS01820 are separated by 262 nucleotides LU632_RS01820 and LU632_RS01825 are separated by 326 nucleotides LU632_RS01825 and LU632_RS01830 overlap by 7 nucleotides LU632_RS01830 and LU632_RS01835 are separated by 171 nucleotides
LU632_RS01815: LU632_RS01815 - PAAR domain-containing protein, at 350,037 to 350,363
_RS01815
LU632_RS01820: LU632_RS01820 - hypothetical protein, at 350,626 to 350,874
_RS01820
LU632_RS01825: LU632_RS01825 - IS5 family transposase, at 351,201 to 351,986
_RS01825
LU632_RS01830: LU632_RS01830 - IS1 family transposase, at 351,980 to 352,677
_RS01830
LU632_RS01835: LU632_RS01835 - transposase, at 352,849 to 353,495
_RS01835
Position (kb) 351
352 Strain fitness (log2 ratio) -2
-1
0
1
2 at 350.211 kb on - strand, within LU632_RS01815 at 350.276 kb on + strand, within LU632_RS01815 at 350.277 kb on - strand, within LU632_RS01815 at 350.315 kb on - strand, within LU632_RS01815 at 350.319 kb on + strand, within LU632_RS01815 at 350.319 kb on + strand, within LU632_RS01815 at 350.351 kb on + strand at 350.351 kb on + strand at 350.352 kb on - strand at 350.352 kb on - strand at 350.375 kb on - strand at 350.434 kb on + strand at 350.434 kb on + strand at 350.434 kb on + strand at 350.434 kb on + strand at 350.434 kb on + strand at 350.435 kb on - strand at 350.467 kb on - strand at 350.490 kb on + strand at 350.556 kb on - strand at 350.556 kb on - strand at 350.556 kb on - strand at 350.556 kb on - strand at 350.612 kb on - strand at 350.612 kb on - strand at 350.637 kb on + strand at 350.637 kb on + strand at 350.638 kb on - strand at 350.667 kb on + strand, within LU632_RS01820 at 350.667 kb on + strand, within LU632_RS01820 at 350.668 kb on - strand, within LU632_RS01820 at 350.676 kb on + strand, within LU632_RS01820 at 350.676 kb on + strand, within LU632_RS01820 at 350.677 kb on - strand, within LU632_RS01820 at 350.775 kb on + strand, within LU632_RS01820 at 350.776 kb on - strand, within LU632_RS01820 at 350.865 kb on + strand at 350.873 kb on - strand at 350.884 kb on + strand at 350.884 kb on + strand at 350.885 kb on - strand at 350.885 kb on - strand at 350.885 kb on - strand at 350.885 kb on - strand at 350.964 kb on + strand at 350.964 kb on + strand at 350.965 kb on - strand at 350.994 kb on + strand at 351.126 kb on + strand at 351.128 kb on + strand at 351.128 kb on + strand at 351.128 kb on + strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.129 kb on - strand at 351.168 kb on - strand at 351.168 kb on - strand at 351.168 kb on - strand at 351.802 kb on - strand, within LU632_RS01825 at 351.802 kb on - strand, within LU632_RS01825 at 352.702 kb on + strand at 352.747 kb on + strand at 352.748 kb on - strand at 352.775 kb on + strand at 352.775 kb on + strand at 352.775 kb on + strand at 352.776 kb on - strand at 352.778 kb on - strand at 352.778 kb on - strand at 352.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 350,211 - LU632_RS01815 0.53 -0.6 350,276 + LU632_RS01815 0.73 +2.7 350,277 - LU632_RS01815 0.73 +0.2 350,315 - LU632_RS01815 0.85 -0.4 350,319 + LU632_RS01815 0.86 -0.4 350,319 + LU632_RS01815 0.86 -1.0 350,351 + -0.2 350,351 + -0.5 350,352 - +0.3 350,352 - +2.7 350,375 - -0.3 350,434 + +0.4 350,434 + -0.3 350,434 + -1.8 350,434 + -1.0 350,434 + +0.4 350,435 - -0.4 350,467 - -0.8 350,490 + +0.5 350,556 - +0.2 350,556 - +1.7 350,556 - +0.2 350,556 - +0.9 350,612 - +0.2 350,612 - +0.9 350,637 + +0.2 350,637 + -0.1 350,638 - -0.0 350,667 + LU632_RS01820 0.16 +0.1 350,667 + LU632_RS01820 0.16 -0.6 350,668 - LU632_RS01820 0.17 -0.7 350,676 + LU632_RS01820 0.20 +0.2 350,676 + LU632_RS01820 0.20 +0.1 350,677 - LU632_RS01820 0.20 -0.1 350,775 + LU632_RS01820 0.60 -0.5 350,776 - LU632_RS01820 0.60 +0.4 350,865 + +1.0 350,873 - +0.5 350,884 + -0.3 350,884 + +1.3 350,885 - +0.4 350,885 - -0.3 350,885 - -0.1 350,885 - -0.8 350,964 + -1.1 350,964 + -0.0 350,965 - -0.2 350,994 + -0.4 351,126 + -0.5 351,128 + -0.4 351,128 + -0.1 351,128 + -0.1 351,129 - +0.7 351,129 - -0.3 351,129 - +0.3 351,129 - +0.1 351,129 - +0.6 351,168 - -0.4 351,168 - +0.7 351,168 - -0.3 351,802 - LU632_RS01825 0.76 +0.1 351,802 - LU632_RS01825 0.76 -0.5 352,702 + -0.5 352,747 + -0.5 352,748 - +0.2 352,775 + +0.6 352,775 + +0.4 352,775 + -0.4 352,776 - -0.3 352,778 - -0.0 352,778 - +1.2 352,788 + +0.5
Or see this region's nucleotide sequence