Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01735 and LU632_RS01740 are separated by 228 nucleotides LU632_RS01740 and LU632_RS01745 are separated by 93 nucleotides LU632_RS01745 and LU632_RS01750 are separated by 40 nucleotides LU632_RS01750 and LU632_RS01755 overlap by 8 nucleotides
LU632_RS01735: LU632_RS01735 - IS481 family transposase, at 340,992 to 342,032
_RS01735
LU632_RS01740: LU632_RS01740 - hypothetical protein, at 342,261 to 342,416
_RS01740
LU632_RS01745: LU632_RS01745 - hypothetical protein, at 342,510 to 342,743
_RS01745
LU632_RS01750: LU632_RS01750 - class I SAM-dependent methyltransferase, at 342,784 to 343,233
_RS01750
LU632_RS01755: LU632_RS01755 - hypothetical protein, at 343,226 to 343,501
_RS01755
Position (kb) 342
343 Strain fitness (log2 ratio) -2
-1
0
1 at 342.108 kb on + strand at 342.125 kb on + strand at 342.159 kb on + strand at 342.159 kb on + strand at 342.201 kb on + strand at 342.214 kb on - strand at 342.214 kb on - strand at 342.217 kb on - strand at 342.345 kb on - strand, within LU632_RS01740 at 342.376 kb on - strand, within LU632_RS01740 at 342.420 kb on + strand at 342.427 kb on - strand at 342.523 kb on + strand at 342.523 kb on + strand at 342.541 kb on - strand, within LU632_RS01745 at 342.591 kb on + strand, within LU632_RS01745 at 342.592 kb on - strand, within LU632_RS01745 at 342.592 kb on - strand, within LU632_RS01745 at 342.595 kb on + strand, within LU632_RS01745 at 342.595 kb on + strand, within LU632_RS01745 at 342.686 kb on + strand, within LU632_RS01745 at 342.689 kb on + strand, within LU632_RS01745 at 342.689 kb on + strand, within LU632_RS01745 at 342.804 kb on + strand at 342.805 kb on - strand at 342.805 kb on - strand at 342.805 kb on - strand at 342.822 kb on + strand at 342.822 kb on + strand at 342.969 kb on + strand, within LU632_RS01750 at 342.991 kb on + strand, within LU632_RS01750 at 343.042 kb on - strand, within LU632_RS01750 at 343.042 kb on - strand, within LU632_RS01750 at 343.083 kb on + strand, within LU632_RS01750 at 343.084 kb on - strand, within LU632_RS01750 at 343.132 kb on - strand, within LU632_RS01750 at 343.258 kb on + strand, within LU632_RS01755 at 343.258 kb on + strand, within LU632_RS01755 at 343.258 kb on + strand, within LU632_RS01755 at 343.259 kb on - strand, within LU632_RS01755 at 343.273 kb on - strand, within LU632_RS01755
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 342,108 + +1.4 342,125 + +1.0 342,159 + -0.1 342,159 + +0.3 342,201 + +0.2 342,214 - -0.4 342,214 - +1.7 342,217 - +0.2 342,345 - LU632_RS01740 0.54 -0.6 342,376 - LU632_RS01740 0.74 -2.0 342,420 + -1.1 342,427 - +0.2 342,523 + -0.6 342,523 + +0.1 342,541 - LU632_RS01745 0.13 -0.1 342,591 + LU632_RS01745 0.35 +0.1 342,592 - LU632_RS01745 0.35 -0.1 342,592 - LU632_RS01745 0.35 +0.3 342,595 + LU632_RS01745 0.36 -0.3 342,595 + LU632_RS01745 0.36 -0.8 342,686 + LU632_RS01745 0.75 -2.0 342,689 + LU632_RS01745 0.76 -0.7 342,689 + LU632_RS01745 0.76 -0.6 342,804 + +0.5 342,805 - +0.2 342,805 - -0.2 342,805 - -1.3 342,822 + +0.2 342,822 + +1.2 342,969 + LU632_RS01750 0.41 +0.1 342,991 + LU632_RS01750 0.46 +0.7 343,042 - LU632_RS01750 0.57 -0.2 343,042 - LU632_RS01750 0.57 -0.7 343,083 + LU632_RS01750 0.66 -0.2 343,084 - LU632_RS01750 0.67 +0.5 343,132 - LU632_RS01750 0.77 +0.1 343,258 + LU632_RS01755 0.12 -0.7 343,258 + LU632_RS01755 0.12 -0.1 343,258 + LU632_RS01755 0.12 +0.1 343,259 - LU632_RS01755 0.12 -1.2 343,273 - LU632_RS01755 0.17 +0.3
Or see this region's nucleotide sequence