Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt proA and LU632_RS01195 are separated by 83 nucleotides LU632_RS01195 and LU632_RS01200 are separated by 42 nucleotides LU632_RS01200 and LU632_RS01205 are separated by 528 nucleotides
LU632_RS01190: proA - glutamate-5-semialdehyde dehydrogenase, at 251,311 to 252,564
proA
LU632_RS01195: LU632_RS01195 - LysE family translocator, at 252,648 to 252,767
_RS01195
LU632_RS01200: LU632_RS01200 - HNH endonuclease, at 252,810 to 253,175
_RS01200
LU632_RS01205: LU632_RS01205 - class I fumarate hydratase FumA, at 253,704 to 255,350
_RS01205
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 251.870 kb on + strand, within proA at 251.870 kb on + strand, within proA at 251.870 kb on + strand, within proA at 251.870 kb on + strand, within proA at 251.871 kb on - strand, within proA at 251.871 kb on - strand, within proA at 251.874 kb on + strand, within proA at 251.874 kb on + strand, within proA at 251.874 kb on + strand, within proA at 251.875 kb on - strand, within proA at 251.875 kb on - strand, within proA at 252.039 kb on + strand, within proA at 252.040 kb on - strand, within proA at 252.040 kb on - strand, within proA at 252.154 kb on - strand, within proA at 252.346 kb on - strand, within proA at 252.523 kb on + strand at 252.523 kb on + strand at 252.523 kb on + strand at 252.559 kb on - strand at 252.572 kb on - strand at 252.576 kb on + strand at 252.577 kb on - strand at 252.577 kb on - strand at 252.591 kb on + strand at 252.591 kb on + strand at 252.592 kb on - strand at 252.592 kb on - strand at 252.701 kb on - strand, within LU632_RS01195 at 252.719 kb on + strand, within LU632_RS01195 at 252.719 kb on + strand, within LU632_RS01195 at 252.720 kb on - strand, within LU632_RS01195 at 252.726 kb on + strand, within LU632_RS01195 at 252.759 kb on - strand at 252.768 kb on + strand at 252.769 kb on - strand at 252.808 kb on - strand at 252.810 kb on - strand at 252.986 kb on - strand, within LU632_RS01200 at 253.018 kb on - strand, within LU632_RS01200 at 253.018 kb on - strand, within LU632_RS01200 at 253.040 kb on + strand, within LU632_RS01200 at 253.077 kb on - strand, within LU632_RS01200 at 253.077 kb on - strand, within LU632_RS01200 at 253.077 kb on - strand, within LU632_RS01200 at 253.085 kb on + strand, within LU632_RS01200 at 253.086 kb on - strand, within LU632_RS01200 at 253.090 kb on - strand, within LU632_RS01200 at 253.248 kb on + strand at 253.248 kb on + strand at 253.249 kb on - strand at 253.252 kb on + strand at 253.263 kb on + strand at 253.267 kb on + strand at 253.267 kb on + strand at 253.267 kb on + strand at 253.268 kb on - strand at 253.268 kb on - strand at 253.268 kb on - strand at 253.268 kb on - strand at 253.268 kb on - strand at 253.345 kb on + strand at 253.360 kb on + strand at 253.517 kb on + strand at 253.518 kb on - strand at 253.518 kb on - strand at 253.520 kb on - strand at 253.607 kb on + strand at 253.705 kb on + strand at 253.736 kb on + strand at 253.862 kb on + strand at 253.901 kb on + strand, within LU632_RS01205 at 253.901 kb on + strand, within LU632_RS01205 at 253.902 kb on - strand, within LU632_RS01205 at 253.964 kb on + strand, within LU632_RS01205 at 253.974 kb on - strand, within LU632_RS01205 at 253.974 kb on - strand, within LU632_RS01205 at 253.979 kb on + strand, within LU632_RS01205 at 253.979 kb on + strand, within LU632_RS01205 at 253.980 kb on - strand, within LU632_RS01205 at 254.012 kb on - strand, within LU632_RS01205 at 254.089 kb on + strand, within LU632_RS01205 at 254.089 kb on + strand, within LU632_RS01205 at 254.093 kb on - strand, within LU632_RS01205 at 254.113 kb on + strand, within LU632_RS01205 at 254.113 kb on + strand, within LU632_RS01205 at 254.114 kb on - strand, within LU632_RS01205 at 254.114 kb on - strand, within LU632_RS01205
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 251,870 + proA LU632_RS01190 0.45 -0.2 251,870 + proA LU632_RS01190 0.45 -0.8 251,870 + proA LU632_RS01190 0.45 -1.7 251,870 + proA LU632_RS01190 0.45 -0.8 251,871 - proA LU632_RS01190 0.45 -2.8 251,871 - proA LU632_RS01190 0.45 -1.0 251,874 + proA LU632_RS01190 0.45 -0.0 251,874 + proA LU632_RS01190 0.45 -2.0 251,874 + proA LU632_RS01190 0.45 -1.3 251,875 - proA LU632_RS01190 0.45 -1.7 251,875 - proA LU632_RS01190 0.45 -1.4 252,039 + proA LU632_RS01190 0.58 -1.4 252,040 - proA LU632_RS01190 0.58 -0.2 252,040 - proA LU632_RS01190 0.58 -3.5 252,154 - proA LU632_RS01190 0.67 +0.8 252,346 - proA LU632_RS01190 0.83 -2.0 252,523 + -1.9 252,523 + -3.4 252,523 + -1.5 252,559 - -3.0 252,572 - -0.2 252,576 + -0.4 252,577 - +0.2 252,577 - +0.0 252,591 + -0.7 252,591 + -0.5 252,592 - -0.2 252,592 - +1.8 252,701 - LU632_RS01195 0.44 +0.7 252,719 + LU632_RS01195 0.59 -0.2 252,719 + LU632_RS01195 0.59 -0.8 252,720 - LU632_RS01195 0.60 +1.2 252,726 + LU632_RS01195 0.65 -0.2 252,759 - -0.0 252,768 + -0.2 252,769 - +3.4 252,808 - -0.1 252,810 - +1.8 252,986 - LU632_RS01200 0.48 -1.7 253,018 - LU632_RS01200 0.57 -0.1 253,018 - LU632_RS01200 0.57 +0.5 253,040 + LU632_RS01200 0.63 -0.2 253,077 - LU632_RS01200 0.73 -0.6 253,077 - LU632_RS01200 0.73 +0.4 253,077 - LU632_RS01200 0.73 -0.6 253,085 + LU632_RS01200 0.75 -0.1 253,086 - LU632_RS01200 0.75 +0.1 253,090 - LU632_RS01200 0.77 -0.7 253,248 + +0.2 253,248 + -0.8 253,249 - +0.7 253,252 + -0.6 253,263 + -0.5 253,267 + -0.3 253,267 + +0.4 253,267 + -0.5 253,268 - -0.5 253,268 - -0.1 253,268 - +0.4 253,268 - +0.8 253,268 - +0.2 253,345 + -0.7 253,360 + -0.7 253,517 + -0.3 253,518 - -0.7 253,518 - -0.5 253,520 - +0.6 253,607 + -0.2 253,705 + +2.4 253,736 + +0.9 253,862 + -0.5 253,901 + LU632_RS01205 0.12 -0.6 253,901 + LU632_RS01205 0.12 -0.1 253,902 - LU632_RS01205 0.12 -0.2 253,964 + LU632_RS01205 0.16 +0.1 253,974 - LU632_RS01205 0.16 -0.8 253,974 - LU632_RS01205 0.16 +0.7 253,979 + LU632_RS01205 0.17 -0.5 253,979 + LU632_RS01205 0.17 +2.8 253,980 - LU632_RS01205 0.17 -0.7 254,012 - LU632_RS01205 0.19 +0.0 254,089 + LU632_RS01205 0.23 +0.9 254,089 + LU632_RS01205 0.23 +0.2 254,093 - LU632_RS01205 0.24 +0.2 254,113 + LU632_RS01205 0.25 -1.0 254,113 + LU632_RS01205 0.25 -0.5 254,114 - LU632_RS01205 0.25 -1.2 254,114 - LU632_RS01205 0.25 +0.2
Or see this region's nucleotide sequence