Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnpA and LU632_RS01010 are separated by 190 nucleotides LU632_RS01010 and purD are separated by 163 nucleotides purD and purH are separated by 14 nucleotides
LU632_RS01005: tnpA - IS200/IS605 family transposase, at 216,552 to 216,992
tnpA
LU632_RS01010: LU632_RS01010 - sugar phosphate isomerase/epimerase, at 217,183 to 217,332
_RS01010
LU632_RS01015: purD - phosphoribosylamine--glycine ligase, at 217,496 to 218,776
purD
LU632_RS01020: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 218,791 to 220,380
purH
Position (kb) 217
218
219 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 217.164 kb on + strand at 217.196 kb on - strand at 217.247 kb on - strand, within LU632_RS01010 at 217.253 kb on + strand, within LU632_RS01010 at 217.268 kb on - strand, within LU632_RS01010 at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.370 kb on + strand at 217.371 kb on - strand at 217.371 kb on - strand at 217.377 kb on + strand at 217.378 kb on - strand at 217.378 kb on - strand at 217.378 kb on - strand at 217.379 kb on + strand at 217.385 kb on + strand at 217.385 kb on + strand at 217.386 kb on - strand at 217.386 kb on - strand at 217.386 kb on - strand at 217.386 kb on - strand at 217.401 kb on + strand at 217.402 kb on - strand at 217.402 kb on - strand at 217.574 kb on - strand at 217.575 kb on + strand at 217.575 kb on + strand at 217.575 kb on + strand at 217.576 kb on - strand at 217.628 kb on + strand, within purD at 217.628 kb on + strand, within purD at 217.690 kb on + strand, within purD at 217.743 kb on + strand, within purD at 217.743 kb on + strand, within purD at 217.744 kb on - strand, within purD at 217.773 kb on - strand, within purD at 217.833 kb on - strand, within purD at 217.915 kb on + strand, within purD at 218.131 kb on + strand, within purD at 218.132 kb on - strand, within purD at 218.132 kb on - strand, within purD at 218.227 kb on + strand, within purD at 218.227 kb on + strand, within purD at 218.320 kb on + strand, within purD at 218.321 kb on - strand, within purD at 218.366 kb on - strand, within purD at 218.366 kb on - strand, within purD at 218.372 kb on + strand, within purD at 218.373 kb on - strand, within purD at 218.377 kb on - strand, within purD at 218.377 kb on - strand, within purD at 218.621 kb on - strand, within purD at 218.766 kb on - strand at 218.793 kb on - strand at 219.030 kb on + strand, within purH at 219.067 kb on - strand, within purH at 219.100 kb on - strand, within purH at 219.112 kb on + strand, within purH at 219.113 kb on - strand, within purH at 219.193 kb on + strand, within purH at 219.194 kb on - strand, within purH at 219.316 kb on - strand, within purH at 219.334 kb on - strand, within purH at 219.423 kb on + strand, within purH at 219.471 kb on - strand, within purH at 219.597 kb on - strand, within purH at 219.661 kb on + strand, within purH at 219.662 kb on - strand, within purH at 219.662 kb on - strand, within purH at 219.662 kb on - strand, within purH at 219.665 kb on + strand, within purH at 219.665 kb on + strand, within purH at 219.666 kb on - strand, within purH
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 217,164 + +2.8 217,196 - +0.0 217,247 - LU632_RS01010 0.43 -0.3 217,253 + LU632_RS01010 0.47 +0.0 217,268 - LU632_RS01010 0.57 -0.8 217,370 + +2.5 217,370 + +0.4 217,370 + -0.2 217,370 + +0.1 217,370 + -0.8 217,371 - +0.2 217,371 - -0.4 217,377 + +0.1 217,378 - -1.0 217,378 - -0.2 217,378 - -0.4 217,379 + -1.7 217,385 + +0.4 217,385 + -0.6 217,386 - -0.6 217,386 - +0.1 217,386 - -0.2 217,386 - -0.0 217,401 + +0.9 217,402 - +0.5 217,402 - +0.2 217,574 - -3.2 217,575 + -1.5 217,575 + +0.8 217,575 + -1.8 217,576 - -2.8 217,628 + purD LU632_RS01015 0.10 -0.8 217,628 + purD LU632_RS01015 0.10 -3.4 217,690 + purD LU632_RS01015 0.15 -1.6 217,743 + purD LU632_RS01015 0.19 -4.1 217,743 + purD LU632_RS01015 0.19 -1.2 217,744 - purD LU632_RS01015 0.19 -2.0 217,773 - purD LU632_RS01015 0.22 -2.7 217,833 - purD LU632_RS01015 0.26 -1.9 217,915 + purD LU632_RS01015 0.33 -2.3 218,131 + purD LU632_RS01015 0.50 -0.2 218,132 - purD LU632_RS01015 0.50 -0.6 218,132 - purD LU632_RS01015 0.50 -2.1 218,227 + purD LU632_RS01015 0.57 -2.1 218,227 + purD LU632_RS01015 0.57 -2.7 218,320 + purD LU632_RS01015 0.64 -2.2 218,321 - purD LU632_RS01015 0.64 +0.2 218,366 - purD LU632_RS01015 0.68 -2.0 218,366 - purD LU632_RS01015 0.68 -0.2 218,372 + purD LU632_RS01015 0.68 -1.8 218,373 - purD LU632_RS01015 0.68 -4.0 218,377 - purD LU632_RS01015 0.69 -1.4 218,377 - purD LU632_RS01015 0.69 -1.5 218,621 - purD LU632_RS01015 0.88 -1.6 218,766 - -0.2 218,793 - -0.2 219,030 + purH LU632_RS01020 0.15 -3.4 219,067 - purH LU632_RS01020 0.17 -0.2 219,100 - purH LU632_RS01020 0.19 -1.4 219,112 + purH LU632_RS01020 0.20 -1.2 219,113 - purH LU632_RS01020 0.20 -0.6 219,193 + purH LU632_RS01020 0.25 -1.2 219,194 - purH LU632_RS01020 0.25 +0.2 219,316 - purH LU632_RS01020 0.33 +0.2 219,334 - purH LU632_RS01020 0.34 -2.7 219,423 + purH LU632_RS01020 0.40 -1.7 219,471 - purH LU632_RS01020 0.43 -1.7 219,597 - purH LU632_RS01020 0.51 -2.1 219,661 + purH LU632_RS01020 0.55 -0.6 219,662 - purH LU632_RS01020 0.55 -2.2 219,662 - purH LU632_RS01020 0.55 +0.2 219,662 - purH LU632_RS01020 0.55 +0.2 219,665 + purH LU632_RS01020 0.55 +0.2 219,665 + purH LU632_RS01020 0.55 +0.8 219,666 - purH LU632_RS01020 0.55 +0.8
Or see this region's nucleotide sequence