Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00705 and tssB are separated by 124 nucleotides tssB and tssC are separated by 17 nucleotides tssC and LU632_RS00720 are separated by 151 nucleotides LU632_RS00720 and tssJ are separated by 130 nucleotides
LU632_RS00705: LU632_RS00705 - type 1 fimbrial protein, at 149,529 to 150,110
_RS00705
LU632_RS00710: tssB - type VI secretion system contractile sheath small subunit, at 150,235 to 150,768
tssB
LU632_RS00715: tssC - type VI secretion system contractile sheath large subunit, at 150,786 to 152,285
tssC
LU632_RS00720: LU632_RS00720 - Hcp family type VI secretion system effector, at 152,437 to 152,922
_RS00720
LU632_RS00725: tssJ - type VI secretion system lipoprotein TssJ, at 153,053 to 153,601
tssJ
Position (kb) 150
151
152
153 Strain fitness (log2 ratio) -1
0
1
2
3 at 149.787 kb on - strand, within LU632_RS00705 at 150.021 kb on + strand, within LU632_RS00705 at 150.033 kb on + strand, within LU632_RS00705 at 150.299 kb on + strand, within tssB at 150.374 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.640 kb on + strand, within tssB at 150.641 kb on - strand, within tssB at 150.795 kb on - strand at 150.795 kb on - strand at 150.809 kb on + strand at 151.029 kb on - strand, within tssC at 151.104 kb on - strand, within tssC at 151.124 kb on + strand, within tssC at 151.148 kb on + strand, within tssC at 151.166 kb on + strand, within tssC at 151.167 kb on - strand, within tssC at 151.224 kb on + strand, within tssC at 151.224 kb on + strand, within tssC at 151.295 kb on + strand, within tssC at 151.296 kb on - strand, within tssC at 151.316 kb on - strand, within tssC at 151.316 kb on - strand, within tssC at 151.459 kb on - strand, within tssC at 151.548 kb on - strand, within tssC at 151.548 kb on - strand, within tssC at 151.556 kb on + strand, within tssC at 151.575 kb on - strand, within tssC at 151.607 kb on + strand, within tssC at 151.614 kb on + strand, within tssC at 151.614 kb on + strand, within tssC at 151.615 kb on - strand, within tssC at 151.615 kb on - strand, within tssC at 151.730 kb on - strand, within tssC at 151.740 kb on - strand, within tssC at 151.962 kb on + strand, within tssC at 151.962 kb on + strand, within tssC at 151.962 kb on + strand, within tssC at 151.963 kb on - strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.964 kb on + strand, within tssC at 151.965 kb on - strand, within tssC at 151.965 kb on - strand, within tssC at 151.965 kb on - strand, within tssC at 152.003 kb on + strand, within tssC at 152.031 kb on - strand, within tssC at 152.079 kb on + strand, within tssC at 152.079 kb on + strand, within tssC at 152.080 kb on - strand, within tssC at 152.084 kb on - strand, within tssC at 152.165 kb on - strand at 152.165 kb on - strand at 152.165 kb on - strand at 152.184 kb on + strand at 152.184 kb on + strand at 152.243 kb on - strand at 152.246 kb on + strand at 152.247 kb on - strand at 152.278 kb on + strand at 152.344 kb on + strand at 152.344 kb on + strand at 152.345 kb on - strand at 152.412 kb on - strand at 152.448 kb on + strand at 152.554 kb on - strand, within LU632_RS00720 at 152.605 kb on - strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.651 kb on - strand, within LU632_RS00720 at 152.671 kb on - strand, within LU632_RS00720 at 152.893 kb on + strand at 153.106 kb on - strand at 153.224 kb on - strand, within tssJ at 153.249 kb on + strand, within tssJ at 153.250 kb on - strand, within tssJ
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 149,787 - LU632_RS00705 0.44 +1.0 150,021 + LU632_RS00705 0.85 +0.4 150,033 + LU632_RS00705 0.87 +0.3 150,299 + tssB LU632_RS00710 0.12 -0.0 150,374 + tssB LU632_RS00710 0.26 -0.1 150,640 + tssB LU632_RS00710 0.76 +0.8 150,640 + tssB LU632_RS00710 0.76 +2.8 150,640 + tssB LU632_RS00710 0.76 +0.2 150,641 - tssB LU632_RS00710 0.76 -0.7 150,795 - +0.8 150,795 - -1.1 150,809 + +0.8 151,029 - tssC LU632_RS00715 0.16 +0.2 151,104 - tssC LU632_RS00715 0.21 -0.2 151,124 + tssC LU632_RS00715 0.23 +0.5 151,148 + tssC LU632_RS00715 0.24 +0.3 151,166 + tssC LU632_RS00715 0.25 +0.1 151,167 - tssC LU632_RS00715 0.25 +0.0 151,224 + tssC LU632_RS00715 0.29 +0.1 151,224 + tssC LU632_RS00715 0.29 -0.2 151,295 + tssC LU632_RS00715 0.34 -0.9 151,296 - tssC LU632_RS00715 0.34 +0.2 151,316 - tssC LU632_RS00715 0.35 -1.0 151,316 - tssC LU632_RS00715 0.35 -0.6 151,459 - tssC LU632_RS00715 0.45 +0.2 151,548 - tssC LU632_RS00715 0.51 -0.7 151,548 - tssC LU632_RS00715 0.51 +0.1 151,556 + tssC LU632_RS00715 0.51 -0.9 151,575 - tssC LU632_RS00715 0.53 +0.2 151,607 + tssC LU632_RS00715 0.55 +0.6 151,614 + tssC LU632_RS00715 0.55 -0.2 151,614 + tssC LU632_RS00715 0.55 -0.3 151,615 - tssC LU632_RS00715 0.55 -0.6 151,615 - tssC LU632_RS00715 0.55 -0.0 151,730 - tssC LU632_RS00715 0.63 -0.1 151,740 - tssC LU632_RS00715 0.64 -0.1 151,962 + tssC LU632_RS00715 0.78 -0.9 151,962 + tssC LU632_RS00715 0.78 -0.3 151,962 + tssC LU632_RS00715 0.78 +0.8 151,963 - tssC LU632_RS00715 0.78 -0.3 151,964 + tssC LU632_RS00715 0.79 -1.2 151,964 + tssC LU632_RS00715 0.79 -0.6 151,964 + tssC LU632_RS00715 0.79 -0.2 151,964 + tssC LU632_RS00715 0.79 +0.3 151,965 - tssC LU632_RS00715 0.79 -0.4 151,965 - tssC LU632_RS00715 0.79 -0.2 151,965 - tssC LU632_RS00715 0.79 +0.6 152,003 + tssC LU632_RS00715 0.81 -0.0 152,031 - tssC LU632_RS00715 0.83 -0.2 152,079 + tssC LU632_RS00715 0.86 -0.3 152,079 + tssC LU632_RS00715 0.86 +0.5 152,080 - tssC LU632_RS00715 0.86 +0.6 152,084 - tssC LU632_RS00715 0.87 -1.5 152,165 - -0.5 152,165 - +0.8 152,165 - -0.2 152,184 + +0.4 152,184 + +1.2 152,243 - +0.2 152,246 + -1.5 152,247 - +0.3 152,278 + -0.2 152,344 + -1.2 152,344 + -0.8 152,345 - +0.6 152,412 - +0.5 152,448 + -0.1 152,554 - LU632_RS00720 0.24 +0.7 152,605 - LU632_RS00720 0.35 +0.4 152,645 + LU632_RS00720 0.43 +0.3 152,645 + LU632_RS00720 0.43 +1.2 152,651 - LU632_RS00720 0.44 +0.4 152,671 - LU632_RS00720 0.48 +1.3 152,893 + -0.4 153,106 - +0.6 153,224 - tssJ LU632_RS00725 0.31 +1.0 153,249 + tssJ LU632_RS00725 0.36 +0.3 153,250 - tssJ LU632_RS00725 0.36 +0.5
Or see this region's nucleotide sequence