Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00660 and LU632_RS00665 are separated by 22 nucleotides LU632_RS00665 and LU632_RS00670 are separated by 5 nucleotides
LU632_RS00660: LU632_RS00660 - UDP-N-acetylglucosamine-transferase, at 135,563 to 136,903
_RS00660
LU632_RS00665: LU632_RS00665 - fimbrial protein, at 136,926 to 137,927
_RS00665
LU632_RS00670: LU632_RS00670 - type VI secretion system ImpA family N-terminal domain-containing protein, at 137,933 to 138,994
_RS00670
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.083 kb on - strand, within LU632_RS00660 at 136.194 kb on - strand, within LU632_RS00660 at 136.196 kb on - strand, within LU632_RS00660 at 136.196 kb on - strand, within LU632_RS00660 at 136.646 kb on - strand, within LU632_RS00660 at 136.778 kb on - strand at 136.790 kb on - strand at 137.073 kb on - strand, within LU632_RS00665 at 137.109 kb on - strand, within LU632_RS00665 at 137.219 kb on - strand, within LU632_RS00665 at 137.243 kb on + strand, within LU632_RS00665 at 137.376 kb on + strand, within LU632_RS00665 at 137.417 kb on - strand, within LU632_RS00665 at 137.435 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.439 kb on + strand, within LU632_RS00665 at 137.440 kb on - strand, within LU632_RS00665 at 137.651 kb on - strand, within LU632_RS00665 at 137.651 kb on - strand, within LU632_RS00665 at 137.652 kb on + strand, within LU632_RS00665 at 137.772 kb on - strand, within LU632_RS00665 at 137.805 kb on - strand, within LU632_RS00665 at 137.840 kb on + strand at 137.840 kb on + strand at 137.913 kb on - strand at 137.927 kb on + strand at 137.927 kb on + strand at 137.931 kb on + strand at 137.932 kb on - strand at 137.975 kb on + strand at 138.188 kb on + strand, within LU632_RS00670 at 138.280 kb on + strand, within LU632_RS00670 at 138.371 kb on + strand, within LU632_RS00670 at 138.371 kb on + strand, within LU632_RS00670 at 138.372 kb on - strand, within LU632_RS00670 at 138.393 kb on + strand, within LU632_RS00670 at 138.579 kb on - strand, within LU632_RS00670 at 138.677 kb on + strand, within LU632_RS00670 at 138.758 kb on - strand, within LU632_RS00670 at 138.883 kb on + strand, within LU632_RS00670 at 138.884 kb on - strand, within LU632_RS00670 at 138.884 kb on - strand, within LU632_RS00670 at 138.884 kb on - strand, within LU632_RS00670 at 138.900 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 136,083 - LU632_RS00660 0.39 +1.6 136,194 - LU632_RS00660 0.47 +1.8 136,196 - LU632_RS00660 0.47 -0.8 136,196 - LU632_RS00660 0.47 -0.7 136,646 - LU632_RS00660 0.81 -0.6 136,778 - -0.2 136,790 - +0.2 137,073 - LU632_RS00665 0.15 +0.2 137,109 - LU632_RS00665 0.18 +0.3 137,219 - LU632_RS00665 0.29 -0.9 137,243 + LU632_RS00665 0.32 +0.1 137,376 + LU632_RS00665 0.45 -0.2 137,417 - LU632_RS00665 0.49 -0.9 137,435 + LU632_RS00665 0.51 -0.3 137,439 + LU632_RS00665 0.51 +0.3 137,439 + LU632_RS00665 0.51 -2.1 137,439 + LU632_RS00665 0.51 +0.8 137,440 - LU632_RS00665 0.51 +0.5 137,651 - LU632_RS00665 0.72 -1.0 137,651 - LU632_RS00665 0.72 -0.4 137,652 + LU632_RS00665 0.72 +0.8 137,772 - LU632_RS00665 0.84 +0.6 137,805 - LU632_RS00665 0.88 +0.3 137,840 + -0.4 137,840 + +1.5 137,913 - -0.6 137,927 + +0.4 137,927 + +0.0 137,931 + +0.3 137,932 - +0.6 137,975 + -0.2 138,188 + LU632_RS00670 0.24 +0.2 138,280 + LU632_RS00670 0.33 +0.9 138,371 + LU632_RS00670 0.41 -0.3 138,371 + LU632_RS00670 0.41 +0.6 138,372 - LU632_RS00670 0.41 -0.9 138,393 + LU632_RS00670 0.43 -0.2 138,579 - LU632_RS00670 0.61 +0.0 138,677 + LU632_RS00670 0.70 -0.1 138,758 - LU632_RS00670 0.78 +0.2 138,883 + LU632_RS00670 0.89 +0.1 138,884 - LU632_RS00670 0.90 +0.2 138,884 - LU632_RS00670 0.90 +0.0 138,884 - LU632_RS00670 0.90 -1.0 138,900 + -0.2
Or see this region's nucleotide sequence