Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00625 and adhP are separated by 323 nucleotides adhP and LU632_RS00635 are separated by 421 nucleotides
LU632_RS00625: LU632_RS00625 - MFS transporter, at 127,716 to 129,320
_RS00625
LU632_RS00630: adhP - alcohol dehydrogenase AdhP, at 129,644 to 130,657
adhP
LU632_RS00635: LU632_RS00635 - hypothetical protein, at 131,079 to 131,258
_RS00635
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 128.752 kb on - strand, within LU632_RS00625 at 128.752 kb on - strand, within LU632_RS00625 at 128.754 kb on - strand, within LU632_RS00625 at 128.754 kb on - strand, within LU632_RS00625 at 128.809 kb on + strand, within LU632_RS00625 at 128.925 kb on + strand, within LU632_RS00625 at 128.926 kb on - strand, within LU632_RS00625 at 128.977 kb on + strand, within LU632_RS00625 at 128.977 kb on + strand, within LU632_RS00625 at 128.978 kb on - strand, within LU632_RS00625 at 128.989 kb on + strand, within LU632_RS00625 at 128.990 kb on - strand, within LU632_RS00625 at 128.992 kb on + strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 129.006 kb on - strand, within LU632_RS00625 at 129.008 kb on + strand, within LU632_RS00625 at 129.028 kb on + strand, within LU632_RS00625 at 129.032 kb on + strand, within LU632_RS00625 at 129.033 kb on - strand, within LU632_RS00625 at 129.033 kb on - strand, within LU632_RS00625 at 129.036 kb on + strand, within LU632_RS00625 at 129.036 kb on + strand, within LU632_RS00625 at 129.121 kb on + strand, within LU632_RS00625 at 129.214 kb on + strand at 129.290 kb on - strand at 129.309 kb on - strand at 129.320 kb on + strand at 129.336 kb on + strand at 129.345 kb on + strand at 129.346 kb on - strand at 129.360 kb on - strand at 129.383 kb on - strand at 129.383 kb on - strand at 129.604 kb on + strand at 129.604 kb on + strand at 129.605 kb on - strand at 129.605 kb on - strand at 129.617 kb on + strand at 129.617 kb on + strand at 129.617 kb on + strand at 129.618 kb on - strand at 129.618 kb on - strand at 129.618 kb on - strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.620 kb on - strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.806 kb on - strand, within adhP at 129.807 kb on + strand, within adhP at 129.948 kb on + strand, within adhP at 130.006 kb on + strand, within adhP at 130.007 kb on - strand, within adhP at 130.095 kb on - strand, within adhP at 130.146 kb on - strand, within adhP at 130.146 kb on - strand, within adhP at 130.165 kb on + strand, within adhP at 130.181 kb on + strand, within adhP at 130.225 kb on + strand, within adhP at 130.226 kb on - strand, within adhP at 130.226 kb on - strand, within adhP at 130.275 kb on + strand, within adhP at 130.370 kb on - strand, within adhP at 130.585 kb on + strand at 130.586 kb on - strand at 130.588 kb on + strand at 130.656 kb on - strand at 130.730 kb on - strand at 130.855 kb on + strand at 130.867 kb on - strand at 130.943 kb on + strand at 131.001 kb on - strand at 131.022 kb on + strand at 131.137 kb on - strand, within LU632_RS00635 at 131.156 kb on + strand, within LU632_RS00635 at 131.204 kb on + strand, within LU632_RS00635 at 131.303 kb on + strand at 131.304 kb on - strand at 131.308 kb on + strand at 131.309 kb on - strand at 131.309 kb on - strand at 131.331 kb on - strand at 131.365 kb on + strand at 131.365 kb on + strand at 131.366 kb on - strand at 131.366 kb on - strand at 131.369 kb on - strand at 131.396 kb on + strand at 131.427 kb on - strand at 131.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 128,752 - LU632_RS00625 0.65 +2.8 128,752 - LU632_RS00625 0.65 +0.1 128,754 - LU632_RS00625 0.65 -0.4 128,754 - LU632_RS00625 0.65 +0.3 128,809 + LU632_RS00625 0.68 +1.0 128,925 + LU632_RS00625 0.75 +0.5 128,926 - LU632_RS00625 0.75 -0.1 128,977 + LU632_RS00625 0.79 +0.8 128,977 + LU632_RS00625 0.79 +1.8 128,978 - LU632_RS00625 0.79 +1.6 128,989 + LU632_RS00625 0.79 -0.4 128,990 - LU632_RS00625 0.79 -0.5 128,992 + LU632_RS00625 0.80 +1.2 128,993 - LU632_RS00625 0.80 +0.2 128,993 - LU632_RS00625 0.80 -0.3 128,993 - LU632_RS00625 0.80 -0.4 128,998 + LU632_RS00625 0.80 -1.3 128,998 + LU632_RS00625 0.80 -0.2 128,998 + LU632_RS00625 0.80 +0.3 128,998 + LU632_RS00625 0.80 -0.4 128,998 + LU632_RS00625 0.80 +0.2 128,999 - LU632_RS00625 0.80 -0.3 128,999 - LU632_RS00625 0.80 +1.5 128,999 - LU632_RS00625 0.80 +0.1 128,999 - LU632_RS00625 0.80 -0.8 129,006 - LU632_RS00625 0.80 -0.5 129,008 + LU632_RS00625 0.80 +0.6 129,028 + LU632_RS00625 0.82 -0.5 129,032 + LU632_RS00625 0.82 +1.2 129,033 - LU632_RS00625 0.82 -0.2 129,033 - LU632_RS00625 0.82 +0.5 129,036 + LU632_RS00625 0.82 +0.3 129,036 + LU632_RS00625 0.82 -0.6 129,121 + LU632_RS00625 0.88 +1.6 129,214 + -0.4 129,290 - -1.0 129,309 - +1.1 129,320 + +1.1 129,336 + +1.6 129,345 + +1.2 129,346 - -0.5 129,360 - -0.6 129,383 - -1.0 129,383 - +0.2 129,604 + +2.2 129,604 + +2.2 129,605 - -0.7 129,605 - +0.4 129,617 + +1.5 129,617 + +1.2 129,617 + +1.8 129,618 - -2.6 129,618 - -1.5 129,618 - +0.1 129,619 + +1.1 129,619 + +0.2 129,619 + +1.6 129,619 + +1.8 129,620 - -0.8 129,621 + -0.6 129,621 + -0.8 129,621 + -0.2 129,621 + +1.2 129,621 + +0.2 129,806 - adhP LU632_RS00630 0.16 -0.8 129,807 + adhP LU632_RS00630 0.16 -0.3 129,948 + adhP LU632_RS00630 0.30 -1.8 130,006 + adhP LU632_RS00630 0.36 -1.6 130,007 - adhP LU632_RS00630 0.36 -0.6 130,095 - adhP LU632_RS00630 0.44 -1.3 130,146 - adhP LU632_RS00630 0.50 -0.1 130,146 - adhP LU632_RS00630 0.50 -0.4 130,165 + adhP LU632_RS00630 0.51 -0.4 130,181 + adhP LU632_RS00630 0.53 -0.3 130,225 + adhP LU632_RS00630 0.57 -1.0 130,226 - adhP LU632_RS00630 0.57 +1.2 130,226 - adhP LU632_RS00630 0.57 -1.2 130,275 + adhP LU632_RS00630 0.62 -1.2 130,370 - adhP LU632_RS00630 0.72 +0.6 130,585 + -0.5 130,586 - -0.4 130,588 + -1.0 130,656 - -1.0 130,730 - -0.2 130,855 + +0.0 130,867 - +0.8 130,943 + -1.5 131,001 - -0.2 131,022 + -0.1 131,137 - LU632_RS00635 0.32 -0.2 131,156 + LU632_RS00635 0.43 +0.1 131,204 + LU632_RS00635 0.69 +1.0 131,303 + +1.4 131,304 - -1.0 131,308 + -0.4 131,309 - +0.1 131,309 - +0.1 131,331 - +0.1 131,365 + +0.9 131,365 + +2.2 131,366 - -0.8 131,366 - -0.0 131,369 - +0.5 131,396 + -1.0 131,427 - -0.6 131,437 - -0.2
Or see this region's nucleotide sequence