Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00380 and LU632_RS00385 are separated by 185 nucleotides LU632_RS00385 and LU632_RS00390 are separated by 154 nucleotides LU632_RS00390 and LU632_RS00395 are separated by 274 nucleotides
LU632_RS00380: LU632_RS00380 - DUF4225 domain-containing protein, at 79,544 to 80,347
_RS00380
LU632_RS00385: LU632_RS00385 - DDE-type integrase/transposase/recombinase, at 80,533 to 80,849
_RS00385
LU632_RS00390: LU632_RS00390 - sugar kinase, at 81,004 to 81,936
_RS00390
LU632_RS00395: LU632_RS00395 - AsmA family protein, at 82,211 to 84,226
_RS00395
Position (kb) 81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.159 kb on + strand, within LU632_RS00380 at 80.160 kb on - strand, within LU632_RS00380 at 80.192 kb on + strand, within LU632_RS00380 at 80.252 kb on - strand, within LU632_RS00380 at 80.279 kb on + strand at 80.326 kb on + strand at 80.326 kb on + strand at 80.327 kb on - strand at 80.441 kb on + strand at 80.441 kb on + strand at 80.442 kb on - strand at 80.442 kb on - strand at 80.442 kb on - strand at 80.442 kb on - strand at 80.487 kb on - strand at 80.487 kb on - strand at 80.491 kb on - strand at 80.583 kb on + strand, within LU632_RS00385 at 80.905 kb on + strand at 80.906 kb on - strand at 80.906 kb on - strand at 80.921 kb on + strand at 81.031 kb on - strand at 81.125 kb on + strand, within LU632_RS00390 at 81.126 kb on - strand, within LU632_RS00390 at 81.136 kb on - strand, within LU632_RS00390 at 81.159 kb on + strand, within LU632_RS00390 at 81.384 kb on - strand, within LU632_RS00390 at 81.539 kb on + strand, within LU632_RS00390 at 81.539 kb on + strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.540 kb on - strand, within LU632_RS00390 at 81.545 kb on + strand, within LU632_RS00390 at 81.546 kb on - strand, within LU632_RS00390 at 81.552 kb on - strand, within LU632_RS00390 at 81.552 kb on - strand, within LU632_RS00390 at 81.558 kb on + strand, within LU632_RS00390 at 81.559 kb on - strand, within LU632_RS00390 at 81.571 kb on + strand, within LU632_RS00390 at 81.571 kb on + strand, within LU632_RS00390 at 81.671 kb on + strand, within LU632_RS00390 at 81.674 kb on - strand, within LU632_RS00390 at 81.688 kb on - strand, within LU632_RS00390 at 81.900 kb on + strand at 81.900 kb on + strand at 81.921 kb on + strand at 81.978 kb on + strand at 82.148 kb on + strand at 82.225 kb on - strand at 82.225 kb on - strand at 82.260 kb on + strand at 82.261 kb on - strand at 82.261 kb on - strand at 82.416 kb on + strand, within LU632_RS00395 at 82.471 kb on - strand, within LU632_RS00395 at 82.481 kb on + strand, within LU632_RS00395 at 82.481 kb on + strand, within LU632_RS00395 at 82.514 kb on + strand, within LU632_RS00395 at 82.514 kb on + strand, within LU632_RS00395 at 82.515 kb on - strand, within LU632_RS00395 at 82.515 kb on - strand, within LU632_RS00395 at 82.519 kb on - strand, within LU632_RS00395 at 82.581 kb on + strand, within LU632_RS00395 at 82.582 kb on - strand, within LU632_RS00395 at 82.594 kb on - strand, within LU632_RS00395 at 82.659 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.662 kb on + strand, within LU632_RS00395 at 82.683 kb on + strand, within LU632_RS00395 at 82.684 kb on - strand, within LU632_RS00395
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 80,159 + LU632_RS00380 0.76 +0.1 80,160 - LU632_RS00380 0.77 -0.9 80,192 + LU632_RS00380 0.81 +0.2 80,252 - LU632_RS00380 0.88 +0.1 80,279 + -0.5 80,326 + +0.2 80,326 + +0.5 80,327 - +1.4 80,441 + -0.4 80,441 + -0.2 80,442 - +1.8 80,442 - +0.0 80,442 - +0.8 80,442 - +0.5 80,487 - +0.5 80,487 - -0.4 80,491 - +0.8 80,583 + LU632_RS00385 0.16 -0.9 80,905 + -0.5 80,906 - -0.2 80,906 - -1.4 80,921 + +0.2 81,031 - +0.0 81,125 + LU632_RS00390 0.13 -0.2 81,126 - LU632_RS00390 0.13 +1.8 81,136 - LU632_RS00390 0.14 +0.3 81,159 + LU632_RS00390 0.17 +0.6 81,384 - LU632_RS00390 0.41 +0.8 81,539 + LU632_RS00390 0.57 +0.2 81,539 + LU632_RS00390 0.57 +0.0 81,540 - LU632_RS00390 0.57 -0.7 81,540 - LU632_RS00390 0.57 +0.1 81,540 - LU632_RS00390 0.57 +0.5 81,545 + LU632_RS00390 0.58 -0.1 81,546 - LU632_RS00390 0.58 -1.1 81,552 - LU632_RS00390 0.59 -0.3 81,552 - LU632_RS00390 0.59 -1.0 81,558 + LU632_RS00390 0.59 -0.3 81,559 - LU632_RS00390 0.59 -0.4 81,571 + LU632_RS00390 0.61 -0.5 81,571 + LU632_RS00390 0.61 +0.4 81,671 + LU632_RS00390 0.71 +0.2 81,674 - LU632_RS00390 0.72 +0.8 81,688 - LU632_RS00390 0.73 -0.8 81,900 + -0.2 81,900 + -0.5 81,921 + -0.3 81,978 + -0.7 82,148 + +0.2 82,225 - -0.1 82,225 - -0.8 82,260 + -0.4 82,261 - -0.5 82,261 - -1.3 82,416 + LU632_RS00395 0.10 -0.3 82,471 - LU632_RS00395 0.13 +1.0 82,481 + LU632_RS00395 0.13 +0.8 82,481 + LU632_RS00395 0.13 +1.2 82,514 + LU632_RS00395 0.15 +1.2 82,514 + LU632_RS00395 0.15 -0.2 82,515 - LU632_RS00395 0.15 -0.4 82,515 - LU632_RS00395 0.15 -0.5 82,519 - LU632_RS00395 0.15 +1.4 82,581 + LU632_RS00395 0.18 -0.5 82,582 - LU632_RS00395 0.18 -0.3 82,594 - LU632_RS00395 0.19 -2.1 82,659 + LU632_RS00395 0.22 -0.8 82,662 + LU632_RS00395 0.22 -0.2 82,662 + LU632_RS00395 0.22 +0.3 82,662 + LU632_RS00395 0.22 -0.6 82,683 + LU632_RS00395 0.23 -0.5 82,684 - LU632_RS00395 0.23 +0.1
Or see this region's nucleotide sequence