Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00330

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthmsP and LU632_RS00330 are separated by 222 nucleotidesLU632_RS00330 and LU632_RS00335 are separated by 237 nucleotides LU632_RS00325: hmsP - biofilm formation regulator HmsP, at 67,193 to 69,226 hmsP LU632_RS00330: LU632_RS00330 - dicarboxylate/amino acid:cation symporter, at 69,449 to 70,729 _RS00330 LU632_RS00335: LU632_RS00335 - insulinase family protein, at 70,967 to 72,460 _RS00335 Position (kb) 69 70 71Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 68.776 kb on + strand, within hmsPat 68.777 kb on - strand, within hmsPat 68.938 kb on + strand, within hmsPat 68.938 kb on + strand, within hmsPat 68.967 kb on + strand, within hmsPat 68.982 kb on + strand, within hmsPat 68.983 kb on - strand, within hmsPat 68.989 kb on + strand, within hmsPat 69.008 kb on - strand, within hmsPat 69.008 kb on - strand, within hmsPat 69.008 kb on - strand, within hmsPat 69.134 kb on + strandat 69.164 kb on - strandat 69.164 kb on - strandat 69.173 kb on + strandat 69.271 kb on + strandat 69.318 kb on - strandat 69.406 kb on + strandat 69.407 kb on - strandat 69.448 kb on + strandat 69.449 kb on - strandat 69.490 kb on - strandat 69.510 kb on + strandat 69.511 kb on - strandat 69.646 kb on + strand, within LU632_RS00330at 69.647 kb on - strand, within LU632_RS00330at 69.665 kb on - strand, within LU632_RS00330at 69.718 kb on + strand, within LU632_RS00330at 69.856 kb on + strand, within LU632_RS00330at 69.895 kb on + strand, within LU632_RS00330at 69.913 kb on - strand, within LU632_RS00330at 70.066 kb on + strand, within LU632_RS00330at 70.075 kb on + strand, within LU632_RS00330at 70.127 kb on + strand, within LU632_RS00330at 70.128 kb on - strand, within LU632_RS00330at 70.128 kb on - strand, within LU632_RS00330at 70.128 kb on - strand, within LU632_RS00330at 70.128 kb on - strand, within LU632_RS00330at 70.128 kb on - strand, within LU632_RS00330at 70.193 kb on - strand, within LU632_RS00330at 70.213 kb on + strand, within LU632_RS00330at 70.215 kb on + strand, within LU632_RS00330at 70.370 kb on + strand, within LU632_RS00330at 70.370 kb on + strand, within LU632_RS00330at 70.393 kb on + strand, within LU632_RS00330at 70.394 kb on - strand, within LU632_RS00330at 70.582 kb on + strand, within LU632_RS00330at 70.626 kb on + strandat 70.742 kb on - strandat 70.749 kb on + strandat 70.803 kb on - strandat 70.805 kb on + strandat 70.806 kb on - strandat 70.885 kb on - strandat 70.965 kb on - strandat 70.965 kb on - strandat 71.134 kb on + strand, within LU632_RS00335at 71.135 kb on - strand, within LU632_RS00335at 71.154 kb on + strand, within LU632_RS00335at 71.154 kb on + strand, within LU632_RS00335at 71.155 kb on - strand, within LU632_RS00335at 71.159 kb on - strand, within LU632_RS00335at 71.195 kb on + strand, within LU632_RS00335at 71.279 kb on - strand, within LU632_RS00335at 71.279 kb on - strand, within LU632_RS00335at 71.333 kb on + strand, within LU632_RS00335at 71.334 kb on - strand, within LU632_RS00335at 71.336 kb on - strand, within LU632_RS00335at 71.591 kb on + strand, within LU632_RS00335at 71.591 kb on + strand, within LU632_RS00335at 71.592 kb on - strand, within LU632_RS00335at 71.604 kb on - strand, within LU632_RS00335at 71.672 kb on - strand, within LU632_RS00335

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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68,776 + hmsP LU632_RS00325 0.78 -0.9
68,777 - hmsP LU632_RS00325 0.78 -1.0
68,938 + hmsP LU632_RS00325 0.86 -0.8
68,938 + hmsP LU632_RS00325 0.86 +0.4
68,967 + hmsP LU632_RS00325 0.87 +0.2
68,982 + hmsP LU632_RS00325 0.88 +1.2
68,983 - hmsP LU632_RS00325 0.88 -1.0
68,989 + hmsP LU632_RS00325 0.88 +0.1
69,008 - hmsP LU632_RS00325 0.89 -0.1
69,008 - hmsP LU632_RS00325 0.89 -0.7
69,008 - hmsP LU632_RS00325 0.89 +0.1
69,134 + -0.2
69,164 - +1.0
69,164 - -0.3
69,173 + +1.1
69,271 + +0.9
69,318 - -0.2
69,406 + +4.5
69,407 - +0.0
69,448 + -1.4
69,449 - -0.2
69,490 - -1.8
69,510 + -0.7
69,511 - -0.6
69,646 + LU632_RS00330 0.15 -1.5
69,647 - LU632_RS00330 0.15 +0.0
69,665 - LU632_RS00330 0.17 -1.0
69,718 + LU632_RS00330 0.21 +0.2
69,856 + LU632_RS00330 0.32 -0.4
69,895 + LU632_RS00330 0.35 -1.3
69,913 - LU632_RS00330 0.36 -1.5
70,066 + LU632_RS00330 0.48 -0.4
70,075 + LU632_RS00330 0.49 -1.4
70,127 + LU632_RS00330 0.53 -0.7
70,128 - LU632_RS00330 0.53 -0.7
70,128 - LU632_RS00330 0.53 -0.8
70,128 - LU632_RS00330 0.53 -0.0
70,128 - LU632_RS00330 0.53 -2.3
70,128 - LU632_RS00330 0.53 -0.9
70,193 - LU632_RS00330 0.58 +0.1
70,213 + LU632_RS00330 0.60 +1.0
70,215 + LU632_RS00330 0.60 -0.6
70,370 + LU632_RS00330 0.72 -1.2
70,370 + LU632_RS00330 0.72 -0.3
70,393 + LU632_RS00330 0.74 -1.2
70,394 - LU632_RS00330 0.74 -0.7
70,582 + LU632_RS00330 0.88 -0.9
70,626 + -0.2
70,742 - +0.2
70,749 + -0.9
70,803 - -0.4
70,805 + -0.6
70,806 - -0.1
70,885 - +0.1
70,965 - +0.3
70,965 - -0.0
71,134 + LU632_RS00335 0.11 +0.1
71,135 - LU632_RS00335 0.11 +0.1
71,154 + LU632_RS00335 0.13 +0.4
71,154 + LU632_RS00335 0.13 +0.2
71,155 - LU632_RS00335 0.13 -0.1
71,159 - LU632_RS00335 0.13 +0.2
71,195 + LU632_RS00335 0.15 -0.5
71,279 - LU632_RS00335 0.21 -0.7
71,279 - LU632_RS00335 0.21 +0.4
71,333 + LU632_RS00335 0.24 +0.5
71,334 - LU632_RS00335 0.25 +0.3
71,336 - LU632_RS00335 0.25 +0.1
71,591 + LU632_RS00335 0.42 -0.1
71,591 + LU632_RS00335 0.42 -0.0
71,592 - LU632_RS00335 0.42 -0.0
71,604 - LU632_RS00335 0.43 -0.2
71,672 - LU632_RS00335 0.47 +0.0

Or see this region's nucleotide sequence