Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00175

Experiment: HBM-CucXylem

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00165 and LU632_RS00170 are separated by 91 nucleotidesLU632_RS00170 and LU632_RS00175 are separated by 89 nucleotidesLU632_RS00175 and LU632_RS00180 are separated by 357 nucleotides LU632_RS00165: LU632_RS00165 - IS6 family transposase, at 31,279 to 31,968 _RS00165 LU632_RS00170: LU632_RS00170 - hypothetical protein, at 32,060 to 32,641 _RS00170 LU632_RS00175: LU632_RS00175 - IS6 family transposase, at 32,731 to 33,212 _RS00175 LU632_RS00180: LU632_RS00180 - DUF3053 domain-containing protein, at 33,570 to 34,286 _RS00180 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2at 32.012 kb on + strandat 32.013 kb on - strandat 32.018 kb on + strandat 32.018 kb on + strandat 32.028 kb on + strandat 32.029 kb on - strandat 32.029 kb on - strandat 32.036 kb on + strandat 32.036 kb on + strandat 32.037 kb on - strandat 32.037 kb on - strandat 32.037 kb on - strandat 32.037 kb on - strandat 32.040 kb on + strandat 32.041 kb on - strandat 32.041 kb on - strandat 32.068 kb on + strandat 32.068 kb on + strandat 32.203 kb on + strand, within LU632_RS00170at 32.203 kb on + strand, within LU632_RS00170at 32.204 kb on - strand, within LU632_RS00170at 32.206 kb on + strand, within LU632_RS00170at 32.206 kb on + strand, within LU632_RS00170at 32.206 kb on + strand, within LU632_RS00170at 32.207 kb on - strand, within LU632_RS00170at 32.207 kb on - strand, within LU632_RS00170at 32.207 kb on - strand, within LU632_RS00170at 32.207 kb on - strand, within LU632_RS00170at 32.209 kb on - strand, within LU632_RS00170at 32.296 kb on - strand, within LU632_RS00170at 32.300 kb on - strand, within LU632_RS00170at 32.300 kb on - strand, within LU632_RS00170at 32.300 kb on - strand, within LU632_RS00170at 32.368 kb on + strand, within LU632_RS00170at 32.371 kb on + strand, within LU632_RS00170at 32.371 kb on + strand, within LU632_RS00170at 32.400 kb on + strand, within LU632_RS00170at 32.485 kb on + strand, within LU632_RS00170at 32.497 kb on + strand, within LU632_RS00170at 32.507 kb on + strand, within LU632_RS00170at 32.507 kb on + strand, within LU632_RS00170at 32.507 kb on + strand, within LU632_RS00170at 32.508 kb on - strand, within LU632_RS00170at 32.575 kb on + strand, within LU632_RS00170at 32.587 kb on + strandat 32.597 kb on - strandat 32.598 kb on + strandat 32.598 kb on + strandat 32.598 kb on + strandat 32.598 kb on + strandat 32.598 kb on + strandat 32.599 kb on - strandat 32.599 kb on - strandat 32.599 kb on - strandat 32.599 kb on - strandat 32.599 kb on - strandat 32.599 kb on - strandat 32.603 kb on - strandat 32.621 kb on + strandat 33.300 kb on + strandat 33.301 kb on - strandat 33.332 kb on + strandat 33.365 kb on + strandat 33.394 kb on + strandat 33.402 kb on - strandat 33.568 kb on + strandat 33.569 kb on - strandat 33.571 kb on + strandat 33.571 kb on + strandat 33.647 kb on + strand, within LU632_RS00180at 33.647 kb on + strand, within LU632_RS00180at 33.652 kb on + strand, within LU632_RS00180at 33.653 kb on - strand, within LU632_RS00180at 33.698 kb on + strand, within LU632_RS00180at 33.699 kb on - strand, within LU632_RS00180at 33.705 kb on + strand, within LU632_RS00180at 33.745 kb on - strand, within LU632_RS00180at 33.822 kb on - strand, within LU632_RS00180at 33.824 kb on - strand, within LU632_RS00180at 33.971 kb on - strand, within LU632_RS00180at 33.996 kb on + strand, within LU632_RS00180at 33.997 kb on - strand, within LU632_RS00180at 34.060 kb on + strand, within LU632_RS00180at 34.072 kb on + strand, within LU632_RS00180at 34.073 kb on - strand, within LU632_RS00180at 34.084 kb on + strand, within LU632_RS00180at 34.152 kb on - strand, within LU632_RS00180

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-CucXylem
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32,012 + +0.8
32,013 - +1.2
32,018 + +0.8
32,018 + +0.4
32,028 + -0.7
32,029 - -0.3
32,029 - -2.2
32,036 + -0.4
32,036 + +0.2
32,037 - -0.1
32,037 - -0.4
32,037 - +0.7
32,037 - +1.4
32,040 + -0.2
32,041 - -1.0
32,041 - +0.8
32,068 + -0.2
32,068 + +1.0
32,203 + LU632_RS00170 0.25 +0.0
32,203 + LU632_RS00170 0.25 +0.6
32,204 - LU632_RS00170 0.25 +0.5
32,206 + LU632_RS00170 0.25 +0.6
32,206 + LU632_RS00170 0.25 +0.8
32,206 + LU632_RS00170 0.25 -0.5
32,207 - LU632_RS00170 0.25 -1.5
32,207 - LU632_RS00170 0.25 -0.9
32,207 - LU632_RS00170 0.25 -0.5
32,207 - LU632_RS00170 0.25 -0.7
32,209 - LU632_RS00170 0.26 -0.0
32,296 - LU632_RS00170 0.41 +0.0
32,300 - LU632_RS00170 0.41 +1.8
32,300 - LU632_RS00170 0.41 +0.2
32,300 - LU632_RS00170 0.41 +0.1
32,368 + LU632_RS00170 0.53 +0.1
32,371 + LU632_RS00170 0.53 -0.2
32,371 + LU632_RS00170 0.53 +0.2
32,400 + LU632_RS00170 0.58 -0.2
32,485 + LU632_RS00170 0.73 -0.0
32,497 + LU632_RS00170 0.75 -0.9
32,507 + LU632_RS00170 0.77 -0.9
32,507 + LU632_RS00170 0.77 +0.0
32,507 + LU632_RS00170 0.77 +0.8
32,508 - LU632_RS00170 0.77 +1.5
32,575 + LU632_RS00170 0.88 -1.0
32,587 + -0.3
32,597 - +0.3
32,598 + +0.0
32,598 + -0.2
32,598 + +0.1
32,598 + +0.5
32,598 + -0.0
32,599 - +0.1
32,599 - +1.4
32,599 - +0.2
32,599 - -0.0
32,599 - -1.0
32,599 - -0.4
32,603 - -0.5
32,621 + +0.6
33,300 + -0.4
33,301 - +0.3
33,332 + -0.5
33,365 + +0.4
33,394 + -0.0
33,402 - -0.3
33,568 + +0.0
33,569 - -1.7
33,571 + -0.4
33,571 + -0.2
33,647 + LU632_RS00180 0.11 -0.9
33,647 + LU632_RS00180 0.11 -0.0
33,652 + LU632_RS00180 0.11 +0.3
33,653 - LU632_RS00180 0.12 +1.0
33,698 + LU632_RS00180 0.18 -0.5
33,699 - LU632_RS00180 0.18 +0.2
33,705 + LU632_RS00180 0.19 +1.8
33,745 - LU632_RS00180 0.24 -0.0
33,822 - LU632_RS00180 0.35 +0.2
33,824 - LU632_RS00180 0.35 +0.0
33,971 - LU632_RS00180 0.56 -0.6
33,996 + LU632_RS00180 0.59 +1.8
33,997 - LU632_RS00180 0.60 -0.7
34,060 + LU632_RS00180 0.68 +0.1
34,072 + LU632_RS00180 0.70 -0.4
34,073 - LU632_RS00180 0.70 +0.8
34,084 + LU632_RS00180 0.72 -0.0
34,152 - LU632_RS00180 0.81 -0.9

Or see this region's nucleotide sequence