Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kduD and LU632_RS00065 are separated by 90 nucleotides LU632_RS00065 and LU632_RS00070 are separated by 73 nucleotides LU632_RS00070 and LU632_RS00075 are separated by 143 nucleotides
LU632_RS00060: kduD - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 12,621 to 13,382
kduD
LU632_RS00065: LU632_RS00065 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 13,473 to 14,210
_RS00065
LU632_RS00070: LU632_RS00070 - hypothetical protein, at 14,284 to 14,787
_RS00070
LU632_RS00075: LU632_RS00075 - LacI family DNA-binding transcriptional regulator, at 14,931 to 15,956
_RS00075
Position (kb) 14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 13.332 kb on + strand at 13.332 kb on + strand at 13.334 kb on + strand at 13.335 kb on - strand at 13.344 kb on + strand at 13.346 kb on + strand at 13.346 kb on + strand at 13.346 kb on + strand at 13.347 kb on - strand at 13.347 kb on - strand at 13.347 kb on - strand at 13.347 kb on - strand at 13.428 kb on + strand at 13.562 kb on + strand, within LU632_RS00065 at 13.707 kb on + strand, within LU632_RS00065 at 13.708 kb on - strand, within LU632_RS00065 at 13.708 kb on - strand, within LU632_RS00065 at 13.708 kb on - strand, within LU632_RS00065 at 13.957 kb on + strand, within LU632_RS00065 at 14.285 kb on + strand at 14.286 kb on - strand at 14.341 kb on - strand, within LU632_RS00070 at 14.447 kb on + strand, within LU632_RS00070 at 14.674 kb on + strand, within LU632_RS00070 at 14.817 kb on - strand at 14.817 kb on - strand at 14.842 kb on - strand at 14.885 kb on + strand at 15.042 kb on - strand, within LU632_RS00075 at 15.458 kb on + strand, within LU632_RS00075 at 15.588 kb on + strand, within LU632_RS00075 at 15.595 kb on + strand, within LU632_RS00075 at 15.596 kb on - strand, within LU632_RS00075 at 15.599 kb on + strand, within LU632_RS00075 at 15.600 kb on - strand, within LU632_RS00075 at 15.600 kb on - strand, within LU632_RS00075 at 15.620 kb on - strand, within LU632_RS00075 at 15.728 kb on + strand, within LU632_RS00075 at 15.741 kb on - strand, within LU632_RS00075
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 13,332 + -0.0 13,332 + -2.4 13,334 + +0.6 13,335 - +0.2 13,344 + -0.0 13,346 + +0.3 13,346 + +0.3 13,346 + +1.4 13,347 - +1.2 13,347 - -0.3 13,347 - +0.8 13,347 - -1.6 13,428 + -0.0 13,562 + LU632_RS00065 0.12 -0.5 13,707 + LU632_RS00065 0.32 -0.8 13,708 - LU632_RS00065 0.32 +0.1 13,708 - LU632_RS00065 0.32 -0.2 13,708 - LU632_RS00065 0.32 -1.5 13,957 + LU632_RS00065 0.66 +0.3 14,285 + +0.8 14,286 - +0.2 14,341 - LU632_RS00070 0.11 -0.2 14,447 + LU632_RS00070 0.32 -1.6 14,674 + LU632_RS00070 0.77 -0.8 14,817 - +0.9 14,817 - -0.0 14,842 - -0.0 14,885 + +1.2 15,042 - LU632_RS00075 0.11 +0.5 15,458 + LU632_RS00075 0.51 +0.6 15,588 + LU632_RS00075 0.64 -0.4 15,595 + LU632_RS00075 0.65 -1.1 15,596 - LU632_RS00075 0.65 -0.0 15,599 + LU632_RS00075 0.65 -0.4 15,600 - LU632_RS00075 0.65 +0.8 15,600 - LU632_RS00075 0.65 +0.6 15,620 - LU632_RS00075 0.67 +0.8 15,728 + LU632_RS00075 0.78 -0.5 15,741 - LU632_RS00075 0.79 -0.0
Or see this region's nucleotide sequence