Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25665 and LU632_RS25670 are separated by 44 nucleotides LU632_RS25670 and LU632_RS25675 are separated by 5 nucleotides LU632_RS25675 and LU632_RS25680 are separated by 32 nucleotides LU632_RS25680 and LU632_RS25685 are separated by 110 nucleotides LU632_RS25685 and LU632_RS25690 overlap by 4 nucleotides
LU632_RS25665: LU632_RS25665 - lytic transglycosylase domain-containing protein, at 63,064 to 63,540
_RS25665
LU632_RS25670: LU632_RS25670 - prepilin peptidase, at 63,585 to 64,202
_RS25670
LU632_RS25675: LU632_RS25675 - shufflon system plasmid conjugative transfer pilus tip adhesin PilV, at 64,208 to 65,599
_RS25675
LU632_RS25680: LU632_RS25680 - hypothetical protein, at 65,632 to 65,835
_RS25680
LU632_RS25685: LU632_RS25685 - DotD/TraH family lipoprotein, at 65,946 to 66,398
_RS25685
LU632_RS25690: LU632_RS25690 - type IV secretion system DotC family protein, at 66,395 to 67,183
_RS25690
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.212 kb on + strand, within LU632_RS25665 at 63.225 kb on + strand, within LU632_RS25665 at 63.231 kb on + strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.234 kb on + strand, within LU632_RS25665 at 63.252 kb on + strand, within LU632_RS25665 at 63.253 kb on - strand, within LU632_RS25665 at 63.347 kb on + strand, within LU632_RS25665 at 63.347 kb on + strand, within LU632_RS25665 at 63.348 kb on - strand, within LU632_RS25665 at 63.366 kb on + strand, within LU632_RS25665 at 63.367 kb on - strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.444 kb on + strand, within LU632_RS25665 at 63.445 kb on - strand, within LU632_RS25665 at 63.445 kb on - strand, within LU632_RS25665 at 63.502 kb on + strand at 63.502 kb on + strand at 63.503 kb on - strand at 63.511 kb on + strand at 63.512 kb on - strand at 63.521 kb on + strand at 63.562 kb on + strand at 63.563 kb on - strand at 63.575 kb on - strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.600 kb on - strand at 63.600 kb on - strand at 63.600 kb on - strand at 63.601 kb on + strand at 63.661 kb on + strand, within LU632_RS25670 at 63.661 kb on + strand, within LU632_RS25670 at 63.662 kb on - strand, within LU632_RS25670 at 63.662 kb on - strand, within LU632_RS25670 at 63.699 kb on - strand, within LU632_RS25670 at 63.748 kb on + strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.073 kb on + strand, within LU632_RS25670 at 64.073 kb on + strand, within LU632_RS25670 at 64.074 kb on - strand, within LU632_RS25670 at 64.074 kb on - strand, within LU632_RS25670 at 64.094 kb on + strand, within LU632_RS25670 at 64.194 kb on - strand at 64.200 kb on + strand at 64.201 kb on - strand at 64.201 kb on - strand at 64.261 kb on - strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.297 kb on - strand at 64.297 kb on - strand at 64.297 kb on - strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.313 kb on + strand at 64.314 kb on - strand at 64.316 kb on - strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.323 kb on - strand at 64.323 kb on - strand at 64.323 kb on - strand at 64.391 kb on + strand, within LU632_RS25675 at 64.391 kb on + strand, within LU632_RS25675 at 64.508 kb on - strand, within LU632_RS25675 at 64.510 kb on + strand, within LU632_RS25675 at 64.552 kb on + strand, within LU632_RS25675 at 64.552 kb on + strand, within LU632_RS25675 at 64.553 kb on - strand, within LU632_RS25675 at 64.605 kb on + strand, within LU632_RS25675 at 64.606 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.641 kb on + strand, within LU632_RS25675 at 64.722 kb on - strand, within LU632_RS25675 at 64.973 kb on - strand, within LU632_RS25675 at 65.024 kb on + strand, within LU632_RS25675 at 65.024 kb on + strand, within LU632_RS25675 at 65.025 kb on - strand, within LU632_RS25675 at 65.025 kb on - strand, within LU632_RS25675 at 65.027 kb on - strand, within LU632_RS25675 at 65.027 kb on - strand, within LU632_RS25675 at 65.154 kb on + strand, within LU632_RS25675 at 65.155 kb on - strand, within LU632_RS25675 at 65.155 kb on - strand, within LU632_RS25675 at 65.309 kb on + strand, within LU632_RS25675 at 65.310 kb on - strand, within LU632_RS25675 at 65.310 kb on - strand, within LU632_RS25675 at 65.312 kb on - strand, within LU632_RS25675 at 65.331 kb on + strand, within LU632_RS25675 at 65.332 kb on + strand, within LU632_RS25675 at 65.341 kb on - strand, within LU632_RS25675 at 65.341 kb on - strand, within LU632_RS25675 at 65.341 kb on - strand, within LU632_RS25675 at 65.345 kb on - strand, within LU632_RS25675 at 65.381 kb on + strand, within LU632_RS25675 at 65.383 kb on + strand, within LU632_RS25675 at 65.384 kb on - strand, within LU632_RS25675 at 65.462 kb on - strand at 65.462 kb on - strand at 65.472 kb on - strand at 65.485 kb on + strand at 65.486 kb on - strand at 65.486 kb on - strand at 65.515 kb on - strand at 65.533 kb on + strand at 65.561 kb on + strand at 65.562 kb on - strand at 65.562 kb on - strand at 65.562 kb on - strand at 65.575 kb on + strand at 65.623 kb on + strand at 65.627 kb on + strand at 65.627 kb on + strand at 65.627 kb on + strand at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.673 kb on + strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.674 kb on - strand, within LU632_RS25680 at 65.729 kb on + strand, within LU632_RS25680 at 65.729 kb on + strand, within LU632_RS25680 at 65.730 kb on - strand, within LU632_RS25680 at 65.730 kb on - strand, within LU632_RS25680 at 65.733 kb on + strand, within LU632_RS25680 at 65.733 kb on + strand, within LU632_RS25680 at 65.734 kb on - strand, within LU632_RS25680 at 65.754 kb on - strand, within LU632_RS25680 at 65.757 kb on + strand, within LU632_RS25680 at 65.757 kb on + strand, within LU632_RS25680 at 65.856 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.896 kb on + strand at 65.897 kb on - strand at 65.897 kb on - strand at 65.928 kb on - strand at 65.959 kb on - strand at 66.014 kb on + strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.015 kb on - strand, within LU632_RS25685 at 66.018 kb on - strand, within LU632_RS25685 at 66.082 kb on - strand, within LU632_RS25685 at 66.215 kb on + strand, within LU632_RS25685 at 66.225 kb on + strand, within LU632_RS25685 at 66.226 kb on - strand, within LU632_RS25685 at 66.313 kb on + strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.314 kb on - strand, within LU632_RS25685 at 66.361 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.409 kb on - strand at 66.426 kb on + strand at 66.427 kb on - strand at 66.472 kb on + strand at 66.472 kb on + strand at 66.473 kb on - strand at 66.473 kb on - strand at 66.506 kb on + strand, within LU632_RS25690 at 66.507 kb on - strand, within LU632_RS25690 at 66.507 kb on - strand, within LU632_RS25690
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 63,212 + LU632_RS25665 0.31 -0.3 63,225 + LU632_RS25665 0.34 +0.2 63,231 + LU632_RS25665 0.35 +0.6 63,232 - LU632_RS25665 0.35 -0.4 63,232 - LU632_RS25665 0.35 +0.2 63,232 - LU632_RS25665 0.35 +0.8 63,232 - LU632_RS25665 0.35 -0.9 63,234 + LU632_RS25665 0.36 +0.8 63,252 + LU632_RS25665 0.39 -0.6 63,253 - LU632_RS25665 0.40 -0.6 63,347 + LU632_RS25665 0.59 -1.5 63,347 + LU632_RS25665 0.59 +0.9 63,348 - LU632_RS25665 0.60 -1.2 63,366 + LU632_RS25665 0.63 -0.1 63,367 - LU632_RS25665 0.64 +0.8 63,442 + LU632_RS25665 0.79 +0.2 63,442 + LU632_RS25665 0.79 +0.4 63,442 + LU632_RS25665 0.79 -0.5 63,442 + LU632_RS25665 0.79 -0.1 63,442 + LU632_RS25665 0.79 +0.7 63,442 + LU632_RS25665 0.79 -0.2 63,442 + LU632_RS25665 0.79 -0.5 63,442 + LU632_RS25665 0.79 +0.8 63,442 + LU632_RS25665 0.79 -0.8 63,443 - LU632_RS25665 0.79 +0.5 63,443 - LU632_RS25665 0.79 -0.2 63,443 - LU632_RS25665 0.79 +0.6 63,443 - LU632_RS25665 0.79 -0.1 63,443 - LU632_RS25665 0.79 -0.5 63,443 - LU632_RS25665 0.79 -0.1 63,444 + LU632_RS25665 0.80 -0.5 63,445 - LU632_RS25665 0.80 +0.1 63,445 - LU632_RS25665 0.80 +0.4 63,502 + -0.1 63,502 + +0.3 63,503 - +0.4 63,511 + +0.2 63,512 - -0.5 63,521 + +2.0 63,562 + +0.4 63,563 - +1.2 63,575 - -0.4 63,599 + +0.5 63,599 + +1.1 63,599 + +0.4 63,599 + +1.4 63,600 - +1.1 63,600 - -0.2 63,600 - +0.6 63,601 + -1.5 63,661 + LU632_RS25670 0.12 +1.1 63,661 + LU632_RS25670 0.12 +0.2 63,662 - LU632_RS25670 0.12 -0.5 63,662 - LU632_RS25670 0.12 -0.3 63,699 - LU632_RS25670 0.18 +0.8 63,748 + LU632_RS25670 0.26 -0.7 63,925 - LU632_RS25670 0.55 -2.8 63,925 - LU632_RS25670 0.55 -0.2 63,925 - LU632_RS25670 0.55 +0.1 63,996 + LU632_RS25670 0.67 -0.6 63,996 + LU632_RS25670 0.67 -0.2 63,996 + LU632_RS25670 0.67 +0.8 63,997 - LU632_RS25670 0.67 +0.2 63,997 - LU632_RS25670 0.67 -0.3 63,997 - LU632_RS25670 0.67 +2.4 63,997 - LU632_RS25670 0.67 -0.4 64,000 + LU632_RS25670 0.67 -0.7 64,000 + LU632_RS25670 0.67 -0.6 64,000 + LU632_RS25670 0.67 +0.1 64,073 + LU632_RS25670 0.79 -0.4 64,073 + LU632_RS25670 0.79 +0.5 64,074 - LU632_RS25670 0.79 -0.8 64,074 - LU632_RS25670 0.79 +0.8 64,094 + LU632_RS25670 0.82 +0.7 64,194 - +0.0 64,200 + -0.6 64,201 - +0.5 64,201 - +0.9 64,261 - +0.2 64,296 + -0.2 64,296 + -0.2 64,296 + +0.0 64,296 + -0.8 64,296 + -0.5 64,296 + -0.3 64,296 + -0.1 64,296 + -0.8 64,296 + +0.2 64,296 + +0.2 64,296 + -0.2 64,297 - +0.1 64,297 - -0.4 64,297 - +0.2 64,298 + +1.5 64,298 + -1.2 64,298 + +0.4 64,298 + -0.4 64,298 + +0.8 64,298 + -0.2 64,298 + -1.1 64,298 + +0.4 64,298 + +0.1 64,298 + -0.9 64,299 - -1.0 64,299 - -1.0 64,299 - +0.8 64,299 - -0.5 64,299 - +0.2 64,299 - +1.8 64,299 - +0.2 64,299 - +0.0 64,313 + -0.2 64,314 - -1.0 64,316 - -1.3 64,322 + +0.2 64,322 + -1.0 64,322 + -1.0 64,322 + -2.6 64,322 + +0.3 64,322 + -0.5 64,322 + -0.2 64,322 + +0.3 64,322 + +1.8 64,323 - +1.8 64,323 - -0.1 64,323 - +0.3 64,391 + LU632_RS25675 0.13 +1.1 64,391 + LU632_RS25675 0.13 +0.2 64,508 - LU632_RS25675 0.22 -0.2 64,510 + LU632_RS25675 0.22 +0.0 64,552 + LU632_RS25675 0.25 -0.7 64,552 + LU632_RS25675 0.25 +0.5 64,553 - LU632_RS25675 0.25 -1.0 64,605 + LU632_RS25675 0.29 +0.2 64,606 - LU632_RS25675 0.29 +0.5 64,611 - LU632_RS25675 0.29 +0.9 64,611 - LU632_RS25675 0.29 +0.1 64,611 - LU632_RS25675 0.29 -0.3 64,641 + LU632_RS25675 0.31 -0.1 64,722 - LU632_RS25675 0.37 +0.2 64,973 - LU632_RS25675 0.55 +0.8 65,024 + LU632_RS25675 0.59 +1.1 65,024 + LU632_RS25675 0.59 +0.8 65,025 - LU632_RS25675 0.59 -0.1 65,025 - LU632_RS25675 0.59 -0.2 65,027 - LU632_RS25675 0.59 -1.9 65,027 - LU632_RS25675 0.59 +1.1 65,154 + LU632_RS25675 0.68 +1.2 65,155 - LU632_RS25675 0.68 +1.8 65,155 - LU632_RS25675 0.68 -0.3 65,309 + LU632_RS25675 0.79 -0.2 65,310 - LU632_RS25675 0.79 +2.2 65,310 - LU632_RS25675 0.79 -1.9 65,312 - LU632_RS25675 0.79 -0.2 65,331 + LU632_RS25675 0.81 -0.4 65,332 + LU632_RS25675 0.81 +0.2 65,341 - LU632_RS25675 0.81 -0.5 65,341 - LU632_RS25675 0.81 -0.6 65,341 - LU632_RS25675 0.81 +0.5 65,345 - LU632_RS25675 0.82 +1.2 65,381 + LU632_RS25675 0.84 -0.2 65,383 + LU632_RS25675 0.84 +0.3 65,384 - LU632_RS25675 0.84 +0.2 65,462 - -0.8 65,462 - +0.0 65,472 - +0.5 65,485 + +0.2 65,486 - -0.6 65,486 - +0.5 65,515 - -0.4 65,533 + +0.6 65,561 + +1.2 65,562 - -0.2 65,562 - +1.0 65,562 - -1.2 65,575 + +0.0 65,623 + -0.5 65,627 + -0.8 65,627 + -0.7 65,627 + -1.1 65,673 + LU632_RS25680 0.20 +0.5 65,673 + LU632_RS25680 0.20 +0.2 65,673 + LU632_RS25680 0.20 -0.4 65,673 + LU632_RS25680 0.20 -0.6 65,673 + LU632_RS25680 0.20 +0.3 65,673 + LU632_RS25680 0.20 -0.2 65,674 - LU632_RS25680 0.21 -0.3 65,674 - LU632_RS25680 0.21 -0.1 65,674 - LU632_RS25680 0.21 +0.4 65,674 - LU632_RS25680 0.21 -1.8 65,674 - LU632_RS25680 0.21 -0.2 65,729 + LU632_RS25680 0.48 +0.5 65,729 + LU632_RS25680 0.48 +0.4 65,730 - LU632_RS25680 0.48 -0.2 65,730 - LU632_RS25680 0.48 +0.9 65,733 + LU632_RS25680 0.50 +0.4 65,733 + LU632_RS25680 0.50 +0.4 65,734 - LU632_RS25680 0.50 +0.4 65,754 - LU632_RS25680 0.60 -0.7 65,757 + LU632_RS25680 0.61 +0.6 65,757 + LU632_RS25680 0.61 +0.4 65,856 + -0.6 65,896 + -0.5 65,896 + -0.1 65,896 + +2.4 65,896 + +1.5 65,896 + -0.8 65,896 + -1.2 65,896 + +0.2 65,896 + -0.3 65,896 + +0.6 65,896 + -1.4 65,897 - +0.4 65,897 - +0.6 65,928 - +0.2 65,959 - +1.8 66,014 + LU632_RS25685 0.15 +0.5 66,015 - LU632_RS25685 0.15 +0.5 66,015 - LU632_RS25685 0.15 +1.3 66,015 - LU632_RS25685 0.15 -2.1 66,015 - LU632_RS25685 0.15 -0.5 66,018 - LU632_RS25685 0.16 +1.1 66,082 - LU632_RS25685 0.30 -0.4 66,215 + LU632_RS25685 0.59 +0.5 66,225 + LU632_RS25685 0.62 +1.8 66,226 - LU632_RS25685 0.62 -0.3 66,313 + LU632_RS25685 0.81 +1.1 66,314 - LU632_RS25685 0.81 -2.1 66,314 - LU632_RS25685 0.81 +1.0 66,314 - LU632_RS25685 0.81 -1.2 66,314 - LU632_RS25685 0.81 -0.2 66,361 - -0.9 66,409 - -0.3 66,409 - +1.1 66,409 - +0.6 66,409 - +0.6 66,426 + +0.0 66,427 - +1.8 66,472 + +0.4 66,472 + +1.5 66,473 - -0.4 66,473 - -0.4 66,506 + LU632_RS25690 0.14 -0.4 66,507 - LU632_RS25690 0.14 -1.5 66,507 - LU632_RS25690 0.14 +0.6
Or see this region's nucleotide sequence