Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25660 and LU632_RS25665 are separated by 69 nucleotides LU632_RS25665 and LU632_RS25670 are separated by 44 nucleotides LU632_RS25670 and LU632_RS25675 are separated by 5 nucleotides
LU632_RS25660: LU632_RS25660 - prepilin, at 62,401 to 62,994
_RS25660
LU632_RS25665: LU632_RS25665 - lytic transglycosylase domain-containing protein, at 63,064 to 63,540
_RS25665
LU632_RS25670: LU632_RS25670 - prepilin peptidase, at 63,585 to 64,202
_RS25670
LU632_RS25675: LU632_RS25675 - shufflon system plasmid conjugative transfer pilus tip adhesin PilV, at 64,208 to 65,599
_RS25675
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 62.601 kb on - strand, within LU632_RS25660 at 62.657 kb on + strand, within LU632_RS25660 at 62.658 kb on - strand, within LU632_RS25660 at 62.731 kb on - strand, within LU632_RS25660 at 62.781 kb on + strand, within LU632_RS25660 at 62.781 kb on + strand, within LU632_RS25660 at 62.781 kb on + strand, within LU632_RS25660 at 62.803 kb on + strand, within LU632_RS25660 at 62.804 kb on - strand, within LU632_RS25660 at 62.993 kb on - strand at 63.037 kb on + strand at 63.038 kb on - strand at 63.038 kb on - strand at 63.038 kb on - strand at 63.064 kb on - strand at 63.084 kb on + strand at 63.085 kb on - strand at 63.128 kb on + strand, within LU632_RS25665 at 63.128 kb on + strand, within LU632_RS25665 at 63.198 kb on - strand, within LU632_RS25665 at 63.212 kb on + strand, within LU632_RS25665 at 63.225 kb on + strand, within LU632_RS25665 at 63.231 kb on + strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.232 kb on - strand, within LU632_RS25665 at 63.234 kb on + strand, within LU632_RS25665 at 63.252 kb on + strand, within LU632_RS25665 at 63.253 kb on - strand, within LU632_RS25665 at 63.347 kb on + strand, within LU632_RS25665 at 63.347 kb on + strand, within LU632_RS25665 at 63.348 kb on - strand, within LU632_RS25665 at 63.366 kb on + strand, within LU632_RS25665 at 63.367 kb on - strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.442 kb on + strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.443 kb on - strand, within LU632_RS25665 at 63.444 kb on + strand, within LU632_RS25665 at 63.445 kb on - strand, within LU632_RS25665 at 63.445 kb on - strand, within LU632_RS25665 at 63.502 kb on + strand at 63.502 kb on + strand at 63.503 kb on - strand at 63.511 kb on + strand at 63.512 kb on - strand at 63.521 kb on + strand at 63.562 kb on + strand at 63.563 kb on - strand at 63.575 kb on - strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.599 kb on + strand at 63.600 kb on - strand at 63.600 kb on - strand at 63.600 kb on - strand at 63.601 kb on + strand at 63.661 kb on + strand, within LU632_RS25670 at 63.661 kb on + strand, within LU632_RS25670 at 63.662 kb on - strand, within LU632_RS25670 at 63.662 kb on - strand, within LU632_RS25670 at 63.699 kb on - strand, within LU632_RS25670 at 63.748 kb on + strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.925 kb on - strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.996 kb on + strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 63.997 kb on - strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.000 kb on + strand, within LU632_RS25670 at 64.073 kb on + strand, within LU632_RS25670 at 64.073 kb on + strand, within LU632_RS25670 at 64.074 kb on - strand, within LU632_RS25670 at 64.074 kb on - strand, within LU632_RS25670 at 64.094 kb on + strand, within LU632_RS25670 at 64.194 kb on - strand at 64.200 kb on + strand at 64.201 kb on - strand at 64.201 kb on - strand at 64.261 kb on - strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.296 kb on + strand at 64.297 kb on - strand at 64.297 kb on - strand at 64.297 kb on - strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.298 kb on + strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.299 kb on - strand at 64.313 kb on + strand at 64.314 kb on - strand at 64.316 kb on - strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.322 kb on + strand at 64.323 kb on - strand at 64.323 kb on - strand at 64.323 kb on - strand at 64.391 kb on + strand, within LU632_RS25675 at 64.391 kb on + strand, within LU632_RS25675 at 64.508 kb on - strand, within LU632_RS25675 at 64.510 kb on + strand, within LU632_RS25675 at 64.552 kb on + strand, within LU632_RS25675 at 64.552 kb on + strand, within LU632_RS25675 at 64.553 kb on - strand, within LU632_RS25675 at 64.605 kb on + strand, within LU632_RS25675 at 64.606 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.611 kb on - strand, within LU632_RS25675 at 64.641 kb on + strand, within LU632_RS25675 at 64.722 kb on - strand, within LU632_RS25675 at 64.973 kb on - strand, within LU632_RS25675 at 65.024 kb on + strand, within LU632_RS25675 at 65.024 kb on + strand, within LU632_RS25675 at 65.025 kb on - strand, within LU632_RS25675 at 65.025 kb on - strand, within LU632_RS25675 at 65.027 kb on - strand, within LU632_RS25675 at 65.027 kb on - strand, within LU632_RS25675 at 65.154 kb on + strand, within LU632_RS25675 at 65.155 kb on - strand, within LU632_RS25675 at 65.155 kb on - strand, within LU632_RS25675
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 62,601 - LU632_RS25660 0.34 -0.5 62,657 + LU632_RS25660 0.43 -1.0 62,658 - LU632_RS25660 0.43 +0.0 62,731 - LU632_RS25660 0.56 +0.1 62,781 + LU632_RS25660 0.64 -0.5 62,781 + LU632_RS25660 0.64 +1.5 62,781 + LU632_RS25660 0.64 -1.5 62,803 + LU632_RS25660 0.68 +1.8 62,804 - LU632_RS25660 0.68 -0.3 62,993 - +0.4 63,037 + -0.2 63,038 - -1.8 63,038 - +0.2 63,038 - -0.4 63,064 - +0.4 63,084 + -0.7 63,085 - -0.3 63,128 + LU632_RS25665 0.13 +0.1 63,128 + LU632_RS25665 0.13 +0.5 63,198 - LU632_RS25665 0.28 -1.6 63,212 + LU632_RS25665 0.31 -0.3 63,225 + LU632_RS25665 0.34 +0.2 63,231 + LU632_RS25665 0.35 +0.6 63,232 - LU632_RS25665 0.35 -0.4 63,232 - LU632_RS25665 0.35 +0.2 63,232 - LU632_RS25665 0.35 +0.8 63,232 - LU632_RS25665 0.35 -0.9 63,234 + LU632_RS25665 0.36 +0.8 63,252 + LU632_RS25665 0.39 -0.6 63,253 - LU632_RS25665 0.40 -0.6 63,347 + LU632_RS25665 0.59 -1.5 63,347 + LU632_RS25665 0.59 +0.9 63,348 - LU632_RS25665 0.60 -1.2 63,366 + LU632_RS25665 0.63 -0.1 63,367 - LU632_RS25665 0.64 +0.8 63,442 + LU632_RS25665 0.79 +0.2 63,442 + LU632_RS25665 0.79 +0.4 63,442 + LU632_RS25665 0.79 -0.5 63,442 + LU632_RS25665 0.79 -0.1 63,442 + LU632_RS25665 0.79 +0.7 63,442 + LU632_RS25665 0.79 -0.2 63,442 + LU632_RS25665 0.79 -0.5 63,442 + LU632_RS25665 0.79 +0.8 63,442 + LU632_RS25665 0.79 -0.8 63,443 - LU632_RS25665 0.79 +0.5 63,443 - LU632_RS25665 0.79 -0.2 63,443 - LU632_RS25665 0.79 +0.6 63,443 - LU632_RS25665 0.79 -0.1 63,443 - LU632_RS25665 0.79 -0.5 63,443 - LU632_RS25665 0.79 -0.1 63,444 + LU632_RS25665 0.80 -0.5 63,445 - LU632_RS25665 0.80 +0.1 63,445 - LU632_RS25665 0.80 +0.4 63,502 + -0.1 63,502 + +0.3 63,503 - +0.4 63,511 + +0.2 63,512 - -0.5 63,521 + +2.0 63,562 + +0.4 63,563 - +1.2 63,575 - -0.4 63,599 + +0.5 63,599 + +1.1 63,599 + +0.4 63,599 + +1.4 63,600 - +1.1 63,600 - -0.2 63,600 - +0.6 63,601 + -1.5 63,661 + LU632_RS25670 0.12 +1.1 63,661 + LU632_RS25670 0.12 +0.2 63,662 - LU632_RS25670 0.12 -0.5 63,662 - LU632_RS25670 0.12 -0.3 63,699 - LU632_RS25670 0.18 +0.8 63,748 + LU632_RS25670 0.26 -0.7 63,925 - LU632_RS25670 0.55 -2.8 63,925 - LU632_RS25670 0.55 -0.2 63,925 - LU632_RS25670 0.55 +0.1 63,996 + LU632_RS25670 0.67 -0.6 63,996 + LU632_RS25670 0.67 -0.2 63,996 + LU632_RS25670 0.67 +0.8 63,997 - LU632_RS25670 0.67 +0.2 63,997 - LU632_RS25670 0.67 -0.3 63,997 - LU632_RS25670 0.67 +2.4 63,997 - LU632_RS25670 0.67 -0.4 64,000 + LU632_RS25670 0.67 -0.7 64,000 + LU632_RS25670 0.67 -0.6 64,000 + LU632_RS25670 0.67 +0.1 64,073 + LU632_RS25670 0.79 -0.4 64,073 + LU632_RS25670 0.79 +0.5 64,074 - LU632_RS25670 0.79 -0.8 64,074 - LU632_RS25670 0.79 +0.8 64,094 + LU632_RS25670 0.82 +0.7 64,194 - +0.0 64,200 + -0.6 64,201 - +0.5 64,201 - +0.9 64,261 - +0.2 64,296 + -0.2 64,296 + -0.2 64,296 + +0.0 64,296 + -0.8 64,296 + -0.5 64,296 + -0.3 64,296 + -0.1 64,296 + -0.8 64,296 + +0.2 64,296 + +0.2 64,296 + -0.2 64,297 - +0.1 64,297 - -0.4 64,297 - +0.2 64,298 + +1.5 64,298 + -1.2 64,298 + +0.4 64,298 + -0.4 64,298 + +0.8 64,298 + -0.2 64,298 + -1.1 64,298 + +0.4 64,298 + +0.1 64,298 + -0.9 64,299 - -1.0 64,299 - -1.0 64,299 - +0.8 64,299 - -0.5 64,299 - +0.2 64,299 - +1.8 64,299 - +0.2 64,299 - +0.0 64,313 + -0.2 64,314 - -1.0 64,316 - -1.3 64,322 + +0.2 64,322 + -1.0 64,322 + -1.0 64,322 + -2.6 64,322 + +0.3 64,322 + -0.5 64,322 + -0.2 64,322 + +0.3 64,322 + +1.8 64,323 - +1.8 64,323 - -0.1 64,323 - +0.3 64,391 + LU632_RS25675 0.13 +1.1 64,391 + LU632_RS25675 0.13 +0.2 64,508 - LU632_RS25675 0.22 -0.2 64,510 + LU632_RS25675 0.22 +0.0 64,552 + LU632_RS25675 0.25 -0.7 64,552 + LU632_RS25675 0.25 +0.5 64,553 - LU632_RS25675 0.25 -1.0 64,605 + LU632_RS25675 0.29 +0.2 64,606 - LU632_RS25675 0.29 +0.5 64,611 - LU632_RS25675 0.29 +0.9 64,611 - LU632_RS25675 0.29 +0.1 64,611 - LU632_RS25675 0.29 -0.3 64,641 + LU632_RS25675 0.31 -0.1 64,722 - LU632_RS25675 0.37 +0.2 64,973 - LU632_RS25675 0.55 +0.8 65,024 + LU632_RS25675 0.59 +1.1 65,024 + LU632_RS25675 0.59 +0.8 65,025 - LU632_RS25675 0.59 -0.1 65,025 - LU632_RS25675 0.59 -0.2 65,027 - LU632_RS25675 0.59 -1.9 65,027 - LU632_RS25675 0.59 +1.1 65,154 + LU632_RS25675 0.68 +1.2 65,155 - LU632_RS25675 0.68 +1.8 65,155 - LU632_RS25675 0.68 -0.3
Or see this region's nucleotide sequence