Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25435 and LU632_RS25440 are separated by 323 nucleotides LU632_RS25440 and LU632_RS25445 are separated by 14 nucleotides LU632_RS25445 and LU632_RS25450 are separated by 1 nucleotides LU632_RS25450 and LU632_RS25455 are separated by 278 nucleotides
LU632_RS25435: LU632_RS25435 - phospholipase D family protein, at 22,884 to 23,357
_RS25435
LU632_RS25440: LU632_RS25440 - hypothetical protein, at 23,681 to 24,205
_RS25440
LU632_RS25445: LU632_RS25445 - relaxase/mobilization nuclease domain-containing protein, at 24,220 to 26,151
_RS25445
LU632_RS25450: LU632_RS25450 - mobilization protein, at 26,153 to 26,497
_RS25450
LU632_RS25455: LU632_RS25455 - molybdopterin-guanine dinucleotide biosynthesis protein MobC, at 26,776 to 27,087
_RS25455
Position (kb) 24
25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.238 kb on + strand, within LU632_RS25435 at 23.314 kb on - strand at 23.328 kb on - strand at 23.335 kb on + strand at 23.336 kb on - strand at 23.355 kb on + strand at 23.407 kb on + strand at 23.412 kb on + strand at 23.412 kb on + strand at 23.413 kb on - strand at 23.442 kb on + strand at 23.443 kb on - strand at 23.599 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.692 kb on + strand at 23.693 kb on - strand at 23.693 kb on - strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.698 kb on + strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.699 kb on - strand at 23.709 kb on - strand at 23.833 kb on + strand, within LU632_RS25440 at 23.863 kb on + strand, within LU632_RS25440 at 23.902 kb on - strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.031 kb on + strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.032 kb on - strand, within LU632_RS25440 at 24.040 kb on - strand, within LU632_RS25440 at 24.110 kb on - strand, within LU632_RS25440 at 24.160 kb on + strand at 24.161 kb on - strand at 24.198 kb on - strand at 24.208 kb on - strand at 24.261 kb on + strand at 24.262 kb on - strand at 24.262 kb on - strand at 24.264 kb on + strand at 24.264 kb on + strand at 24.264 kb on + strand at 24.265 kb on - strand at 24.265 kb on - strand at 24.311 kb on + strand at 24.386 kb on + strand at 24.397 kb on - strand at 24.414 kb on + strand, within LU632_RS25445 at 24.516 kb on + strand, within LU632_RS25445 at 24.517 kb on - strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.518 kb on + strand, within LU632_RS25445 at 24.519 kb on - strand, within LU632_RS25445 at 24.519 kb on - strand, within LU632_RS25445 at 24.547 kb on - strand, within LU632_RS25445 at 24.560 kb on + strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.561 kb on - strand, within LU632_RS25445 at 24.645 kb on + strand, within LU632_RS25445 at 24.645 kb on + strand, within LU632_RS25445 at 24.646 kb on - strand, within LU632_RS25445 at 24.646 kb on - strand, within LU632_RS25445 at 24.648 kb on + strand, within LU632_RS25445 at 24.649 kb on - strand, within LU632_RS25445 at 24.649 kb on - strand, within LU632_RS25445 at 24.918 kb on + strand, within LU632_RS25445 at 24.918 kb on + strand, within LU632_RS25445 at 24.919 kb on - strand, within LU632_RS25445 at 24.930 kb on + strand, within LU632_RS25445 at 24.931 kb on - strand, within LU632_RS25445 at 24.932 kb on - strand, within LU632_RS25445 at 25.010 kb on + strand, within LU632_RS25445 at 25.011 kb on - strand, within LU632_RS25445 at 25.020 kb on - strand, within LU632_RS25445 at 25.060 kb on - strand, within LU632_RS25445 at 25.141 kb on - strand, within LU632_RS25445 at 25.141 kb on - strand, within LU632_RS25445 at 25.188 kb on + strand, within LU632_RS25445 at 25.361 kb on + strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.362 kb on - strand, within LU632_RS25445 at 25.373 kb on - strand, within LU632_RS25445 at 25.480 kb on - strand, within LU632_RS25445 at 25.558 kb on + strand, within LU632_RS25445 at 25.604 kb on + strand, within LU632_RS25445 at 25.605 kb on - strand, within LU632_RS25445 at 25.605 kb on - strand, within LU632_RS25445 at 25.623 kb on - strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.697 kb on + strand, within LU632_RS25445 at 25.698 kb on - strand, within LU632_RS25445 at 25.698 kb on - strand, within LU632_RS25445 at 25.726 kb on - strand, within LU632_RS25445 at 25.802 kb on + strand, within LU632_RS25445 at 26.087 kb on + strand at 26.115 kb on + strand at 26.195 kb on + strand, within LU632_RS25450 at 26.221 kb on + strand, within LU632_RS25450 at 26.221 kb on + strand, within LU632_RS25450 at 26.281 kb on - strand, within LU632_RS25450 at 26.395 kb on + strand, within LU632_RS25450 at 26.492 kb on - strand at 26.535 kb on + strand at 26.536 kb on - strand at 26.653 kb on + strand at 26.656 kb on - strand at 26.714 kb on - strand at 26.730 kb on - strand at 26.796 kb on + strand at 26.797 kb on - strand at 26.820 kb on + strand, within LU632_RS25455 at 26.868 kb on + strand, within LU632_RS25455 at 26.869 kb on - strand, within LU632_RS25455 at 27.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 23,238 + LU632_RS25435 0.75 +0.2 23,238 + LU632_RS25435 0.75 +0.8 23,238 + LU632_RS25435 0.75 +1.5 23,238 + LU632_RS25435 0.75 +0.5 23,238 + LU632_RS25435 0.75 +1.4 23,314 - -0.1 23,328 - -1.1 23,335 + -0.2 23,336 - +1.4 23,355 + +0.1 23,407 + -0.8 23,412 + +0.4 23,412 + +0.6 23,413 - +1.2 23,442 + -0.3 23,443 - +2.0 23,599 + +0.2 23,692 + +1.1 23,692 + +1.2 23,692 + +0.2 23,692 + -0.3 23,693 - +0.2 23,693 - -0.6 23,698 + -0.3 23,698 + +0.1 23,698 + +1.0 23,698 + +0.8 23,698 + -0.8 23,698 + -1.2 23,698 + +0.2 23,698 + +0.6 23,699 - -0.1 23,699 - -0.1 23,699 - +0.2 23,699 - +0.3 23,699 - +0.6 23,709 - +0.0 23,833 + LU632_RS25440 0.29 -0.0 23,863 + LU632_RS25440 0.35 +0.3 23,902 - LU632_RS25440 0.42 +0.5 24,031 + LU632_RS25440 0.67 +0.0 24,031 + LU632_RS25440 0.67 -0.5 24,031 + LU632_RS25440 0.67 +0.2 24,031 + LU632_RS25440 0.67 +0.0 24,031 + LU632_RS25440 0.67 +0.9 24,031 + LU632_RS25440 0.67 -0.3 24,031 + LU632_RS25440 0.67 +0.9 24,031 + LU632_RS25440 0.67 +1.0 24,031 + LU632_RS25440 0.67 +1.2 24,031 + LU632_RS25440 0.67 -0.8 24,031 + LU632_RS25440 0.67 +1.8 24,031 + LU632_RS25440 0.67 -0.5 24,031 + LU632_RS25440 0.67 +0.6 24,031 + LU632_RS25440 0.67 -0.6 24,032 - LU632_RS25440 0.67 -0.1 24,032 - LU632_RS25440 0.67 +0.4 24,032 - LU632_RS25440 0.67 -0.3 24,032 - LU632_RS25440 0.67 +0.3 24,032 - LU632_RS25440 0.67 +0.2 24,032 - LU632_RS25440 0.67 +1.0 24,032 - LU632_RS25440 0.67 +0.5 24,032 - LU632_RS25440 0.67 -0.8 24,032 - LU632_RS25440 0.67 -0.8 24,032 - LU632_RS25440 0.67 -0.3 24,032 - LU632_RS25440 0.67 +0.5 24,032 - LU632_RS25440 0.67 -0.7 24,032 - LU632_RS25440 0.67 -0.4 24,032 - LU632_RS25440 0.67 -0.7 24,040 - LU632_RS25440 0.68 -0.2 24,110 - LU632_RS25440 0.82 -0.8 24,160 + -0.6 24,161 - -0.5 24,198 - +0.4 24,208 - -0.1 24,261 + +0.2 24,262 - +2.4 24,262 - +1.4 24,264 + -0.5 24,264 + +0.1 24,264 + +2.2 24,265 - +1.8 24,265 - -1.0 24,311 + +0.6 24,386 + +1.1 24,397 - +0.2 24,414 + LU632_RS25445 0.10 +1.8 24,516 + LU632_RS25445 0.15 -0.2 24,517 - LU632_RS25445 0.15 +0.0 24,518 + LU632_RS25445 0.15 +0.2 24,518 + LU632_RS25445 0.15 -1.9 24,518 + LU632_RS25445 0.15 +0.3 24,518 + LU632_RS25445 0.15 -0.4 24,518 + LU632_RS25445 0.15 +0.6 24,518 + LU632_RS25445 0.15 +0.3 24,518 + LU632_RS25445 0.15 -1.2 24,519 - LU632_RS25445 0.15 +0.2 24,519 - LU632_RS25445 0.15 -0.2 24,547 - LU632_RS25445 0.17 +0.2 24,560 + LU632_RS25445 0.18 +0.4 24,561 - LU632_RS25445 0.18 +0.0 24,561 - LU632_RS25445 0.18 -0.9 24,561 - LU632_RS25445 0.18 -0.7 24,645 + LU632_RS25445 0.22 -0.2 24,645 + LU632_RS25445 0.22 -1.0 24,646 - LU632_RS25445 0.22 -0.5 24,646 - LU632_RS25445 0.22 +0.8 24,648 + LU632_RS25445 0.22 +0.8 24,649 - LU632_RS25445 0.22 -0.9 24,649 - LU632_RS25445 0.22 -0.2 24,918 + LU632_RS25445 0.36 +1.8 24,918 + LU632_RS25445 0.36 +0.8 24,919 - LU632_RS25445 0.36 -0.5 24,930 + LU632_RS25445 0.37 +1.2 24,931 - LU632_RS25445 0.37 +0.6 24,932 - LU632_RS25445 0.37 -0.1 25,010 + LU632_RS25445 0.41 +1.2 25,011 - LU632_RS25445 0.41 -0.6 25,020 - LU632_RS25445 0.41 -0.9 25,060 - LU632_RS25445 0.43 -0.5 25,141 - LU632_RS25445 0.48 +0.6 25,141 - LU632_RS25445 0.48 +1.8 25,188 + LU632_RS25445 0.50 +0.1 25,361 + LU632_RS25445 0.59 +0.0 25,362 - LU632_RS25445 0.59 +0.8 25,362 - LU632_RS25445 0.59 +0.8 25,362 - LU632_RS25445 0.59 -1.0 25,373 - LU632_RS25445 0.60 +0.4 25,480 - LU632_RS25445 0.65 +2.0 25,558 + LU632_RS25445 0.69 -0.1 25,604 + LU632_RS25445 0.72 -0.1 25,605 - LU632_RS25445 0.72 -0.1 25,605 - LU632_RS25445 0.72 -0.2 25,623 - LU632_RS25445 0.73 +1.1 25,697 + LU632_RS25445 0.76 -0.1 25,697 + LU632_RS25445 0.76 +1.3 25,697 + LU632_RS25445 0.76 +1.4 25,697 + LU632_RS25445 0.76 +1.4 25,698 - LU632_RS25445 0.77 +0.2 25,698 - LU632_RS25445 0.77 +0.2 25,726 - LU632_RS25445 0.78 +0.7 25,802 + LU632_RS25445 0.82 +1.8 26,087 + +1.2 26,115 + +0.5 26,195 + LU632_RS25450 0.12 -0.1 26,221 + LU632_RS25450 0.20 +1.8 26,221 + LU632_RS25450 0.20 -0.6 26,281 - LU632_RS25450 0.37 -0.5 26,395 + LU632_RS25450 0.70 -2.0 26,492 - -0.4 26,535 + +0.7 26,536 - -0.6 26,653 + -1.0 26,656 - +0.4 26,714 - +0.2 26,730 - -0.2 26,796 + +0.4 26,797 - +0.5 26,820 + LU632_RS25455 0.14 -1.6 26,868 + LU632_RS25455 0.29 -0.2 26,869 - LU632_RS25455 0.30 +0.8 27,085 + +0.4
Or see this region's nucleotide sequence