Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25350 and LU632_RS25355 are separated by 60 nucleotides LU632_RS25355 and traO are separated by 2 nucleotides traO and LU632_RS25365 are separated by 11 nucleotides LU632_RS25365 and traQ overlap by 1 nucleotides
LU632_RS25350: LU632_RS25350 - hypothetical protein, at 4,792 to 5,073
_RS25350
LU632_RS25355: LU632_RS25355 - DotH/IcmK family type IV secretion protein, at 5,134 to 5,799
_RS25355
LU632_RS25360: traO - conjugal transfer protein TraO, at 5,802 to 7,061
traO
LU632_RS25365: LU632_RS25365 - hypothetical protein, at 7,073 to 7,867
_RS25365
LU632_RS25370: traQ - conjugal transfer protein TraQ, at 7,867 to 8,394
traQ
Position (kb) 5
6
7
8 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.977 kb on + strand, within LU632_RS25350 at 4.988 kb on + strand, within LU632_RS25350 at 5.272 kb on + strand, within LU632_RS25355 at 5.272 kb on + strand, within LU632_RS25355 at 5.275 kb on - strand, within LU632_RS25355 at 5.275 kb on - strand, within LU632_RS25355 at 5.578 kb on - strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.650 kb on + strand, within LU632_RS25355 at 5.651 kb on - strand, within LU632_RS25355 at 5.651 kb on - strand, within LU632_RS25355 at 5.722 kb on + strand, within LU632_RS25355 at 5.722 kb on + strand, within LU632_RS25355 at 5.723 kb on - strand, within LU632_RS25355 at 5.723 kb on - strand, within LU632_RS25355 at 5.786 kb on + strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.787 kb on - strand at 5.798 kb on - strand at 5.848 kb on + strand at 5.849 kb on - strand at 5.858 kb on + strand at 5.994 kb on + strand, within traO at 6.007 kb on + strand, within traO at 6.007 kb on + strand, within traO at 6.008 kb on - strand, within traO at 6.239 kb on - strand, within traO at 6.277 kb on + strand, within traO at 6.278 kb on - strand, within traO at 6.432 kb on - strand, within traO at 6.528 kb on + strand, within traO at 6.529 kb on - strand, within traO at 6.545 kb on - strand, within traO at 6.545 kb on - strand, within traO at 6.585 kb on - strand, within traO at 6.611 kb on + strand, within traO at 6.611 kb on + strand, within traO at 6.612 kb on - strand, within traO at 6.626 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.695 kb on + strand, within traO at 6.696 kb on - strand, within traO at 6.696 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.754 kb on - strand, within traO at 6.767 kb on + strand, within traO at 6.968 kb on - strand at 7.051 kb on + strand at 7.051 kb on + strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.052 kb on - strand at 7.212 kb on - strand, within LU632_RS25365 at 7.251 kb on + strand, within LU632_RS25365 at 7.252 kb on - strand, within LU632_RS25365 at 7.258 kb on - strand, within LU632_RS25365 at 7.265 kb on + strand, within LU632_RS25365 at 7.265 kb on + strand, within LU632_RS25365 at 7.360 kb on - strand, within LU632_RS25365 at 7.495 kb on - strand, within LU632_RS25365 at 7.612 kb on - strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.695 kb on + strand, within LU632_RS25365 at 7.696 kb on - strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.714 kb on + strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.715 kb on - strand, within LU632_RS25365 at 7.932 kb on - strand, within traQ at 8.010 kb on + strand, within traQ
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,977 + LU632_RS25350 0.66 -1.0 4,988 + LU632_RS25350 0.70 -0.9 5,272 + LU632_RS25355 0.21 -1.2 5,272 + LU632_RS25355 0.21 +0.2 5,275 - LU632_RS25355 0.21 -0.2 5,275 - LU632_RS25355 0.21 +0.8 5,578 - LU632_RS25355 0.67 -1.0 5,650 + LU632_RS25355 0.77 -0.6 5,650 + LU632_RS25355 0.77 -0.5 5,650 + LU632_RS25355 0.77 -0.1 5,650 + LU632_RS25355 0.77 -0.4 5,650 + LU632_RS25355 0.77 +0.9 5,650 + LU632_RS25355 0.77 +0.4 5,651 - LU632_RS25355 0.78 -0.2 5,651 - LU632_RS25355 0.78 -1.5 5,722 + LU632_RS25355 0.88 +0.2 5,722 + LU632_RS25355 0.88 -0.4 5,723 - LU632_RS25355 0.88 +1.2 5,723 - LU632_RS25355 0.88 +1.8 5,786 + -0.5 5,787 - +0.2 5,787 - -0.5 5,787 - +0.4 5,787 - -1.8 5,798 - +0.0 5,848 + -0.2 5,849 - -1.1 5,858 + +0.8 5,994 + traO LU632_RS25360 0.15 +0.0 6,007 + traO LU632_RS25360 0.16 -0.3 6,007 + traO LU632_RS25360 0.16 -0.9 6,008 - traO LU632_RS25360 0.16 +1.1 6,239 - traO LU632_RS25360 0.35 +0.1 6,277 + traO LU632_RS25360 0.38 +1.1 6,278 - traO LU632_RS25360 0.38 +1.5 6,432 - traO LU632_RS25360 0.50 -0.3 6,528 + traO LU632_RS25360 0.58 -0.1 6,529 - traO LU632_RS25360 0.58 -0.2 6,545 - traO LU632_RS25360 0.59 -0.1 6,545 - traO LU632_RS25360 0.59 -0.3 6,585 - traO LU632_RS25360 0.62 -0.5 6,611 + traO LU632_RS25360 0.64 -0.5 6,611 + traO LU632_RS25360 0.64 +0.1 6,612 - traO LU632_RS25360 0.64 -0.4 6,626 + traO LU632_RS25360 0.65 -1.5 6,695 + traO LU632_RS25360 0.71 +0.0 6,695 + traO LU632_RS25360 0.71 -0.1 6,695 + traO LU632_RS25360 0.71 +0.2 6,696 - traO LU632_RS25360 0.71 -1.2 6,696 - traO LU632_RS25360 0.71 -1.2 6,754 - traO LU632_RS25360 0.76 -0.2 6,754 - traO LU632_RS25360 0.76 -0.2 6,754 - traO LU632_RS25360 0.76 -0.2 6,767 + traO LU632_RS25360 0.77 -0.4 6,968 - +1.0 7,051 + -1.3 7,051 + -1.0 7,052 - +0.0 7,052 - +2.2 7,052 - +0.1 7,052 - +1.2 7,212 - LU632_RS25365 0.17 +0.8 7,251 + LU632_RS25365 0.22 +0.4 7,252 - LU632_RS25365 0.23 +0.8 7,258 - LU632_RS25365 0.23 +0.1 7,265 + LU632_RS25365 0.24 -0.4 7,265 + LU632_RS25365 0.24 -0.2 7,360 - LU632_RS25365 0.36 -1.0 7,495 - LU632_RS25365 0.53 -0.8 7,612 - LU632_RS25365 0.68 -0.5 7,695 + LU632_RS25365 0.78 -2.2 7,695 + LU632_RS25365 0.78 +0.1 7,695 + LU632_RS25365 0.78 -0.3 7,696 - LU632_RS25365 0.78 -0.8 7,714 + LU632_RS25365 0.81 -0.0 7,714 + LU632_RS25365 0.81 -0.2 7,714 + LU632_RS25365 0.81 -0.4 7,714 + LU632_RS25365 0.81 -0.7 7,714 + LU632_RS25365 0.81 -0.0 7,715 - LU632_RS25365 0.81 -0.3 7,715 - LU632_RS25365 0.81 +0.3 7,715 - LU632_RS25365 0.81 -1.0 7,715 - LU632_RS25365 0.81 +0.0 7,932 - traQ LU632_RS25370 0.12 -0.7 8,010 + traQ LU632_RS25370 0.27 +0.6
Or see this region's nucleotide sequence