Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24685 and LU632_RS24690 overlap by 98 nucleotides LU632_RS24690 and ovoA are separated by 91 nucleotides ovoA and asnC are separated by 120 nucleotides asnC and LU632_RS24705 are separated by 88 nucleotides
LU632_RS24685: LU632_RS24685 - transposase zinc-binding domain-containing protein, at 4,702,033 to 4,702,581
_RS24685
LU632_RS24690: LU632_RS24690 - transposase, at 4,702,484 to 4,703,257
_RS24690
LU632_RS24695: ovoA - 5-histidylcysteine sulfoxide synthase, at 4,703,349 to 4,705,457
ovoA
LU632_RS24700: asnC - transcriptional regulator AsnC, at 4,705,578 to 4,706,039
asnC
LU632_RS24705: LU632_RS24705 - hypothetical protein, at 4,706,128 to 4,707,396
_RS24705
Position (kb) 4703
4704
4705
4706 Strain fitness (log2 ratio) -1
0
1 at 4703.493 kb on + strand at 4703.556 kb on + strand at 4703.561 kb on + strand, within ovoA at 4703.564 kb on + strand, within ovoA at 4703.564 kb on + strand, within ovoA at 4703.565 kb on - strand, within ovoA at 4703.598 kb on - strand, within ovoA at 4703.598 kb on - strand, within ovoA at 4703.674 kb on - strand, within ovoA at 4703.741 kb on + strand, within ovoA at 4703.823 kb on - strand, within ovoA at 4703.972 kb on - strand, within ovoA at 4704.081 kb on + strand, within ovoA at 4704.413 kb on + strand, within ovoA at 4704.414 kb on - strand, within ovoA at 4704.504 kb on - strand, within ovoA at 4704.538 kb on + strand, within ovoA at 4704.538 kb on + strand, within ovoA at 4704.538 kb on + strand, within ovoA at 4704.550 kb on - strand, within ovoA at 4704.550 kb on - strand, within ovoA at 4704.587 kb on + strand, within ovoA at 4704.596 kb on + strand, within ovoA at 4704.649 kb on - strand, within ovoA at 4704.690 kb on + strand, within ovoA at 4704.691 kb on - strand, within ovoA at 4704.732 kb on + strand, within ovoA at 4704.732 kb on + strand, within ovoA at 4704.759 kb on + strand, within ovoA at 4704.760 kb on - strand, within ovoA at 4704.804 kb on + strand, within ovoA at 4704.804 kb on + strand, within ovoA at 4704.804 kb on + strand, within ovoA at 4704.805 kb on - strand, within ovoA at 4704.805 kb on - strand, within ovoA at 4704.950 kb on + strand, within ovoA at 4704.994 kb on - strand, within ovoA at 4705.106 kb on + strand, within ovoA at 4705.196 kb on + strand, within ovoA at 4705.200 kb on - strand, within ovoA at 4705.200 kb on - strand, within ovoA at 4705.245 kb on + strand, within ovoA at 4705.245 kb on + strand, within ovoA at 4705.246 kb on - strand, within ovoA at 4705.248 kb on - strand at 4705.248 kb on - strand at 4705.248 kb on - strand at 4705.566 kb on + strand at 4705.566 kb on + strand at 4705.583 kb on - strand at 4705.622 kb on + strand at 4705.623 kb on - strand at 4705.654 kb on - strand, within asnC at 4705.802 kb on + strand, within asnC at 4705.878 kb on + strand, within asnC at 4705.878 kb on + strand, within asnC at 4705.879 kb on - strand, within asnC at 4706.031 kb on - strand at 4706.031 kb on - strand at 4706.080 kb on + strand at 4706.132 kb on + strand at 4706.132 kb on + strand at 4706.176 kb on - strand at 4706.231 kb on - strand at 4706.313 kb on + strand, within LU632_RS24705 at 4706.346 kb on + strand, within LU632_RS24705 at 4706.347 kb on - strand, within LU632_RS24705 at 4706.347 kb on - strand, within LU632_RS24705
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,703,493 + -0.0 4,703,556 + +0.8 4,703,561 + ovoA LU632_RS24695 0.10 -0.2 4,703,564 + ovoA LU632_RS24695 0.10 +0.4 4,703,564 + ovoA LU632_RS24695 0.10 +1.4 4,703,565 - ovoA LU632_RS24695 0.10 -0.4 4,703,598 - ovoA LU632_RS24695 0.12 +0.1 4,703,598 - ovoA LU632_RS24695 0.12 +1.4 4,703,674 - ovoA LU632_RS24695 0.15 -0.1 4,703,741 + ovoA LU632_RS24695 0.19 +0.0 4,703,823 - ovoA LU632_RS24695 0.22 -0.4 4,703,972 - ovoA LU632_RS24695 0.30 -0.8 4,704,081 + ovoA LU632_RS24695 0.35 +0.0 4,704,413 + ovoA LU632_RS24695 0.50 +0.2 4,704,414 - ovoA LU632_RS24695 0.50 -0.1 4,704,504 - ovoA LU632_RS24695 0.55 +0.4 4,704,538 + ovoA LU632_RS24695 0.56 -1.0 4,704,538 + ovoA LU632_RS24695 0.56 -0.9 4,704,538 + ovoA LU632_RS24695 0.56 -0.7 4,704,550 - ovoA LU632_RS24695 0.57 +0.4 4,704,550 - ovoA LU632_RS24695 0.57 +0.1 4,704,587 + ovoA LU632_RS24695 0.59 -0.5 4,704,596 + ovoA LU632_RS24695 0.59 -0.5 4,704,649 - ovoA LU632_RS24695 0.62 +0.4 4,704,690 + ovoA LU632_RS24695 0.64 -0.4 4,704,691 - ovoA LU632_RS24695 0.64 -0.3 4,704,732 + ovoA LU632_RS24695 0.66 -0.9 4,704,732 + ovoA LU632_RS24695 0.66 +0.3 4,704,759 + ovoA LU632_RS24695 0.67 +0.1 4,704,760 - ovoA LU632_RS24695 0.67 -0.0 4,704,804 + ovoA LU632_RS24695 0.69 +0.7 4,704,804 + ovoA LU632_RS24695 0.69 +1.2 4,704,804 + ovoA LU632_RS24695 0.69 +0.6 4,704,805 - ovoA LU632_RS24695 0.69 +0.1 4,704,805 - ovoA LU632_RS24695 0.69 +1.0 4,704,950 + ovoA LU632_RS24695 0.76 -0.0 4,704,994 - ovoA LU632_RS24695 0.78 +1.4 4,705,106 + ovoA LU632_RS24695 0.83 -0.2 4,705,196 + ovoA LU632_RS24695 0.88 -0.2 4,705,200 - ovoA LU632_RS24695 0.88 +0.1 4,705,200 - ovoA LU632_RS24695 0.88 -0.1 4,705,245 + ovoA LU632_RS24695 0.90 -0.4 4,705,245 + ovoA LU632_RS24695 0.90 -0.2 4,705,246 - ovoA LU632_RS24695 0.90 +0.0 4,705,248 - -0.3 4,705,248 - -0.4 4,705,248 - +1.1 4,705,566 + +1.1 4,705,566 + -0.3 4,705,583 - +0.2 4,705,622 + +0.2 4,705,623 - +0.2 4,705,654 - asnC LU632_RS24700 0.16 -0.8 4,705,802 + asnC LU632_RS24700 0.48 +0.4 4,705,878 + asnC LU632_RS24700 0.65 +0.7 4,705,878 + asnC LU632_RS24700 0.65 -0.7 4,705,879 - asnC LU632_RS24700 0.65 +0.3 4,706,031 - +0.4 4,706,031 - -0.2 4,706,080 + -0.2 4,706,132 + +0.4 4,706,132 + +0.3 4,706,176 - +1.2 4,706,231 - +0.9 4,706,313 + LU632_RS24705 0.15 +0.4 4,706,346 + LU632_RS24705 0.17 -0.6 4,706,347 - LU632_RS24705 0.17 +0.1 4,706,347 - LU632_RS24705 0.17 -0.7
Or see this region's nucleotide sequence