Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24455 and LU632_RS24460 are separated by 218 nucleotides LU632_RS24460 and LU632_RS24465 are separated by 7 nucleotides LU632_RS24465 and rrf are separated by 111 nucleotides rrf and LU632_RS24475 are separated by 206 nucleotides
LU632_RS24455: LU632_RS24455 - IS1 family transposase, at 4,665,375 to 4,666,072
_RS24455
LU632_RS24460: LU632_RS24460 - tRNA-Trp, at 4,666,291 to 4,666,366
_RS24460
LU632_RS24465: LU632_RS24465 - tRNA-Asp, at 4,666,374 to 4,666,450
_RS24465
LU632_RS24470: rrf - 5S ribosomal RNA, at 4,666,562 to 4,666,677
rrf
LU632_RS24475: LU632_RS24475 - 23S ribosomal RNA, at 4,666,884 to 4,669,786
_RS24475
Position (kb)
4666
4667 Strain fitness (log2 ratio)
-1
0
1 at 4665.312 kb on + strand at 4665.312 kb on + strand at 4665.312 kb on + strand at 4665.313 kb on - strand at 4665.313 kb on - strand at 4665.314 kb on + strand at 4666.156 kb on + strand at 4666.178 kb on + strand at 4666.224 kb on + strand at 4666.224 kb on + strand at 4666.225 kb on - strand at 4666.225 kb on - strand at 4666.226 kb on + strand at 4666.252 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,665,312 + -0.4 4,665,312 + -0.8 4,665,312 + -0.3 4,665,313 - -0.1 4,665,313 - +0.2 4,665,314 + +0.2 4,666,156 + -0.4 4,666,178 + -0.6 4,666,224 + -0.5 4,666,224 + +0.7 4,666,225 - -0.6 4,666,225 - +0.1 4,666,226 + +1.4 4,666,252 - -1.0
Or see this region's nucleotide sequence