Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recQ and pldA are separated by 54 nucleotides pldA and LU632_RS24105 are separated by 170 nucleotides LU632_RS24105 and rarD are separated by 29 nucleotides
LU632_RS24095: recQ - ATP-dependent DNA helicase RecQ, at 4,594,562 to 4,596,385
recQ
LU632_RS24100: pldA - phospholipase A, at 4,596,440 to 4,597,318
pldA
LU632_RS24105: LU632_RS24105 - thioesterase family protein, at 4,597,489 to 4,597,966
_RS24105
LU632_RS24110: rarD - EamA family transporter RarD, at 4,597,996 to 4,598,898
rarD
Position (kb) 4596
4597
4598 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4595.639 kb on + strand, within recQ at 4595.640 kb on - strand, within recQ at 4595.661 kb on + strand, within recQ at 4595.662 kb on - strand, within recQ at 4595.665 kb on + strand, within recQ at 4595.665 kb on + strand, within recQ at 4595.697 kb on + strand, within recQ at 4595.698 kb on - strand, within recQ at 4595.698 kb on - strand, within recQ at 4595.812 kb on + strand, within recQ at 4595.813 kb on - strand, within recQ at 4595.883 kb on - strand, within recQ at 4595.883 kb on - strand, within recQ at 4596.008 kb on + strand, within recQ at 4596.027 kb on + strand, within recQ at 4596.027 kb on + strand, within recQ at 4596.027 kb on + strand, within recQ at 4596.027 kb on + strand, within recQ at 4596.028 kb on - strand, within recQ at 4596.037 kb on + strand, within recQ at 4596.217 kb on - strand at 4596.347 kb on + strand at 4596.461 kb on + strand at 4596.493 kb on + strand at 4596.495 kb on + strand at 4596.496 kb on - strand at 4596.524 kb on - strand at 4596.527 kb on + strand at 4596.527 kb on + strand at 4596.536 kb on - strand, within pldA at 4596.537 kb on + strand, within pldA at 4596.609 kb on + strand, within pldA at 4596.610 kb on - strand, within pldA at 4596.678 kb on + strand, within pldA at 4596.679 kb on - strand, within pldA at 4596.679 kb on - strand, within pldA at 4596.679 kb on - strand, within pldA at 4596.679 kb on - strand, within pldA at 4596.706 kb on + strand, within pldA at 4596.768 kb on - strand, within pldA at 4596.772 kb on + strand, within pldA at 4596.772 kb on + strand, within pldA at 4596.984 kb on + strand, within pldA at 4596.985 kb on - strand, within pldA at 4597.006 kb on + strand, within pldA at 4597.092 kb on + strand, within pldA at 4597.093 kb on - strand, within pldA at 4597.093 kb on - strand, within pldA at 4597.112 kb on - strand, within pldA at 4597.114 kb on + strand, within pldA at 4597.114 kb on + strand, within pldA at 4597.117 kb on + strand, within pldA at 4597.117 kb on + strand, within pldA at 4597.117 kb on + strand, within pldA at 4597.144 kb on - strand, within pldA at 4597.144 kb on - strand, within pldA at 4597.249 kb on + strand at 4597.249 kb on + strand at 4597.249 kb on + strand at 4597.434 kb on - strand at 4597.479 kb on - strand at 4597.523 kb on + strand at 4597.524 kb on - strand at 4597.524 kb on - strand at 4597.524 kb on - strand at 4597.567 kb on - strand, within LU632_RS24105 at 4597.913 kb on - strand, within LU632_RS24105 at 4597.968 kb on + strand at 4597.968 kb on + strand at 4597.980 kb on + strand at 4597.980 kb on + strand at 4597.981 kb on - strand at 4597.981 kb on - strand at 4598.044 kb on + strand at 4598.045 kb on - strand at 4598.071 kb on + strand at 4598.072 kb on - strand at 4598.072 kb on - strand at 4598.076 kb on + strand at 4598.082 kb on + strand at 4598.083 kb on - strand at 4598.220 kb on - strand, within rarD at 4598.247 kb on + strand, within rarD at 4598.311 kb on + strand, within rarD
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,595,639 + recQ LU632_RS24095 0.59 +0.1 4,595,640 - recQ LU632_RS24095 0.59 +0.6 4,595,661 + recQ LU632_RS24095 0.60 +0.1 4,595,662 - recQ LU632_RS24095 0.60 +0.4 4,595,665 + recQ LU632_RS24095 0.60 +1.4 4,595,665 + recQ LU632_RS24095 0.60 -0.1 4,595,697 + recQ LU632_RS24095 0.62 +0.4 4,595,698 - recQ LU632_RS24095 0.62 +0.3 4,595,698 - recQ LU632_RS24095 0.62 -1.4 4,595,812 + recQ LU632_RS24095 0.69 +0.5 4,595,813 - recQ LU632_RS24095 0.69 -0.2 4,595,883 - recQ LU632_RS24095 0.72 +0.2 4,595,883 - recQ LU632_RS24095 0.72 +0.7 4,596,008 + recQ LU632_RS24095 0.79 -0.6 4,596,027 + recQ LU632_RS24095 0.80 -1.0 4,596,027 + recQ LU632_RS24095 0.80 -0.1 4,596,027 + recQ LU632_RS24095 0.80 +0.4 4,596,027 + recQ LU632_RS24095 0.80 +2.0 4,596,028 - recQ LU632_RS24095 0.80 -0.1 4,596,037 + recQ LU632_RS24095 0.81 +0.2 4,596,217 - -0.1 4,596,347 + -0.0 4,596,461 + -0.2 4,596,493 + -1.4 4,596,495 + +0.2 4,596,496 - +1.4 4,596,524 - -0.9 4,596,527 + -1.1 4,596,527 + -0.1 4,596,536 - pldA LU632_RS24100 0.11 +0.4 4,596,537 + pldA LU632_RS24100 0.11 +0.3 4,596,609 + pldA LU632_RS24100 0.19 -0.0 4,596,610 - pldA LU632_RS24100 0.19 -0.3 4,596,678 + pldA LU632_RS24100 0.27 +0.5 4,596,679 - pldA LU632_RS24100 0.27 +0.1 4,596,679 - pldA LU632_RS24100 0.27 +0.4 4,596,679 - pldA LU632_RS24100 0.27 -0.5 4,596,679 - pldA LU632_RS24100 0.27 +0.5 4,596,706 + pldA LU632_RS24100 0.30 -0.2 4,596,768 - pldA LU632_RS24100 0.37 +0.3 4,596,772 + pldA LU632_RS24100 0.38 +0.2 4,596,772 + pldA LU632_RS24100 0.38 -0.5 4,596,984 + pldA LU632_RS24100 0.62 -0.9 4,596,985 - pldA LU632_RS24100 0.62 +0.9 4,597,006 + pldA LU632_RS24100 0.64 -0.6 4,597,092 + pldA LU632_RS24100 0.74 -0.9 4,597,093 - pldA LU632_RS24100 0.74 -1.5 4,597,093 - pldA LU632_RS24100 0.74 +0.1 4,597,112 - pldA LU632_RS24100 0.76 -2.1 4,597,114 + pldA LU632_RS24100 0.77 -0.9 4,597,114 + pldA LU632_RS24100 0.77 -0.5 4,597,117 + pldA LU632_RS24100 0.77 -0.4 4,597,117 + pldA LU632_RS24100 0.77 -0.6 4,597,117 + pldA LU632_RS24100 0.77 +0.3 4,597,144 - pldA LU632_RS24100 0.80 +0.6 4,597,144 - pldA LU632_RS24100 0.80 -0.7 4,597,249 + +0.3 4,597,249 + -0.0 4,597,249 + +0.1 4,597,434 - -0.1 4,597,479 - +0.6 4,597,523 + -0.1 4,597,524 - -0.8 4,597,524 - +0.2 4,597,524 - +0.1 4,597,567 - LU632_RS24105 0.16 -1.2 4,597,913 - LU632_RS24105 0.89 +0.0 4,597,968 + -0.3 4,597,968 + -0.0 4,597,980 + +1.1 4,597,980 + +0.4 4,597,981 - -0.0 4,597,981 - +0.1 4,598,044 + +0.7 4,598,045 - +0.6 4,598,071 + +0.2 4,598,072 - -1.2 4,598,072 - -0.1 4,598,076 + +0.9 4,598,082 + -0.4 4,598,083 - -0.7 4,598,220 - rarD LU632_RS24110 0.25 +0.2 4,598,247 + rarD LU632_RS24110 0.28 +0.3 4,598,311 + rarD LU632_RS24110 0.35 +0.2
Or see this region's nucleotide sequence