Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23055 and LU632_RS23060 are separated by 41 nucleotides LU632_RS23060 and LU632_RS23065 are separated by 133 nucleotides
LU632_RS23055: LU632_RS23055 - serine kinase, at 4,392,013 to 4,393,251
_RS23055
LU632_RS23060: LU632_RS23060 - ATP-grasp domain-containing protein, at 4,393,293 to 4,394,540
_RS23060
LU632_RS23065: LU632_RS23065 - amidinotransferase, at 4,394,674 to 4,395,579
_RS23065
Position (kb) 4393
4394
4395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4392.450 kb on + strand, within LU632_RS23055 at 4392.451 kb on - strand, within LU632_RS23055 at 4392.451 kb on - strand, within LU632_RS23055 at 4392.451 kb on - strand, within LU632_RS23055 at 4392.588 kb on + strand, within LU632_RS23055 at 4392.590 kb on + strand, within LU632_RS23055 at 4392.590 kb on + strand, within LU632_RS23055 at 4392.613 kb on + strand, within LU632_RS23055 at 4392.614 kb on - strand, within LU632_RS23055 at 4392.615 kb on + strand, within LU632_RS23055 at 4392.615 kb on + strand, within LU632_RS23055 at 4392.616 kb on - strand, within LU632_RS23055 at 4392.680 kb on + strand, within LU632_RS23055 at 4392.728 kb on - strand, within LU632_RS23055 at 4393.100 kb on - strand, within LU632_RS23055 at 4393.143 kb on + strand at 4393.309 kb on + strand at 4393.348 kb on + strand at 4393.349 kb on - strand at 4393.415 kb on - strand at 4393.517 kb on - strand, within LU632_RS23060 at 4393.559 kb on - strand, within LU632_RS23060 at 4393.627 kb on - strand, within LU632_RS23060 at 4393.627 kb on - strand, within LU632_RS23060 at 4393.648 kb on + strand, within LU632_RS23060 at 4393.649 kb on - strand, within LU632_RS23060 at 4393.651 kb on - strand, within LU632_RS23060 at 4393.651 kb on - strand, within LU632_RS23060 at 4393.707 kb on + strand, within LU632_RS23060 at 4393.751 kb on - strand, within LU632_RS23060 at 4393.779 kb on + strand, within LU632_RS23060 at 4393.780 kb on - strand, within LU632_RS23060 at 4393.806 kb on + strand, within LU632_RS23060 at 4393.808 kb on + strand, within LU632_RS23060 at 4393.808 kb on + strand, within LU632_RS23060 at 4393.809 kb on - strand, within LU632_RS23060 at 4393.943 kb on - strand, within LU632_RS23060 at 4394.439 kb on - strand at 4394.463 kb on + strand at 4394.590 kb on - strand at 4394.677 kb on + strand at 4394.677 kb on + strand at 4394.678 kb on - strand at 4394.803 kb on + strand, within LU632_RS23065 at 4394.982 kb on + strand, within LU632_RS23065 at 4395.056 kb on + strand, within LU632_RS23065 at 4395.367 kb on - strand, within LU632_RS23065 at 4395.367 kb on - strand, within LU632_RS23065 at 4395.367 kb on - strand, within LU632_RS23065 at 4395.418 kb on - strand, within LU632_RS23065 at 4395.426 kb on - strand, within LU632_RS23065 at 4395.462 kb on + strand, within LU632_RS23065 at 4395.462 kb on + strand, within LU632_RS23065 at 4395.462 kb on + strand, within LU632_RS23065
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,392,450 + LU632_RS23055 0.35 -1.4 4,392,451 - LU632_RS23055 0.35 -0.3 4,392,451 - LU632_RS23055 0.35 -1.9 4,392,451 - LU632_RS23055 0.35 -0.7 4,392,588 + LU632_RS23055 0.46 -0.1 4,392,590 + LU632_RS23055 0.47 -0.4 4,392,590 + LU632_RS23055 0.47 -0.2 4,392,613 + LU632_RS23055 0.48 +0.4 4,392,614 - LU632_RS23055 0.49 +0.4 4,392,615 + LU632_RS23055 0.49 -0.3 4,392,615 + LU632_RS23055 0.49 -0.5 4,392,616 - LU632_RS23055 0.49 -0.2 4,392,680 + LU632_RS23055 0.54 +0.2 4,392,728 - LU632_RS23055 0.58 -0.2 4,393,100 - LU632_RS23055 0.88 -1.3 4,393,143 + -1.1 4,393,309 + -0.2 4,393,348 + -0.8 4,393,349 - -0.9 4,393,415 - +0.4 4,393,517 - LU632_RS23060 0.18 +0.1 4,393,559 - LU632_RS23060 0.21 +0.0 4,393,627 - LU632_RS23060 0.27 -0.5 4,393,627 - LU632_RS23060 0.27 -1.2 4,393,648 + LU632_RS23060 0.28 -0.7 4,393,649 - LU632_RS23060 0.29 +0.4 4,393,651 - LU632_RS23060 0.29 -1.0 4,393,651 - LU632_RS23060 0.29 +1.2 4,393,707 + LU632_RS23060 0.33 -0.6 4,393,751 - LU632_RS23060 0.37 +0.6 4,393,779 + LU632_RS23060 0.39 +0.5 4,393,780 - LU632_RS23060 0.39 +0.3 4,393,806 + LU632_RS23060 0.41 -0.5 4,393,808 + LU632_RS23060 0.41 -0.3 4,393,808 + LU632_RS23060 0.41 -0.8 4,393,809 - LU632_RS23060 0.41 -0.1 4,393,943 - LU632_RS23060 0.52 +1.0 4,394,439 - +2.0 4,394,463 + -0.2 4,394,590 - -1.4 4,394,677 + +0.7 4,394,677 + -0.5 4,394,678 - -0.1 4,394,803 + LU632_RS23065 0.14 +0.6 4,394,982 + LU632_RS23065 0.34 -0.3 4,395,056 + LU632_RS23065 0.42 -0.8 4,395,367 - LU632_RS23065 0.76 -0.7 4,395,367 - LU632_RS23065 0.76 +0.6 4,395,367 - LU632_RS23065 0.76 -0.9 4,395,418 - LU632_RS23065 0.82 +0.4 4,395,426 - LU632_RS23065 0.83 -0.6 4,395,462 + LU632_RS23065 0.87 +0.4 4,395,462 + LU632_RS23065 0.87 +0.2 4,395,462 + LU632_RS23065 0.87 +0.5
Or see this region's nucleotide sequence