Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ompR and LU632_RS22945 are separated by 72 nucleotides LU632_RS22945 and greB are separated by 14 nucleotides greB and LU632_RS22955 are separated by 93 nucleotides LU632_RS22955 and feoA are separated by 146 nucleotides feoA and feoB are separated by 13 nucleotides
LU632_RS22940: ompR - two-component system response regulator OmpR, at 4,370,882 to 4,371,601
ompR
LU632_RS22945: LU632_RS22945 - hypothetical protein, at 4,371,674 to 4,371,889
_RS22945
LU632_RS22950: greB - transcription elongation factor GreB, at 4,371,904 to 4,372,383
greB
LU632_RS22955: LU632_RS22955 - RNA-binding transcriptional accessory protein, at 4,372,477 to 4,374,795
_RS22955
LU632_RS22960: feoA - ferrous iron transporter A, at 4,374,942 to 4,375,166
feoA
LU632_RS22965: feoB - Fe(2+) transporter permease subunit FeoB, at 4,375,180 to 4,377,480
feoB
Position (kb) 4372
4373
4374
4375 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4371.662 kb on + strand at 4371.662 kb on + strand at 4371.680 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.682 kb on + strand at 4371.683 kb on - strand at 4371.747 kb on + strand, within LU632_RS22945 at 4371.878 kb on - strand at 4371.913 kb on - strand at 4372.046 kb on - strand, within greB at 4372.051 kb on + strand, within greB at 4372.051 kb on + strand, within greB at 4372.052 kb on - strand, within greB at 4372.052 kb on - strand, within greB at 4372.093 kb on + strand, within greB at 4372.094 kb on - strand, within greB at 4372.132 kb on + strand, within greB at 4372.246 kb on - strand, within greB at 4372.252 kb on + strand, within greB at 4372.252 kb on + strand, within greB at 4372.252 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.310 kb on + strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.311 kb on - strand, within greB at 4372.323 kb on + strand, within greB at 4372.348 kb on + strand at 4372.349 kb on - strand at 4372.392 kb on + strand at 4372.393 kb on - strand at 4372.443 kb on + strand at 4372.443 kb on + strand at 4372.444 kb on - strand at 4372.444 kb on - strand at 4372.444 kb on - strand at 4372.471 kb on + strand at 4372.471 kb on + strand at 4372.504 kb on - strand at 4372.599 kb on + strand at 4372.755 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.786 kb on + strand, within LU632_RS22955 at 4372.787 kb on - strand, within LU632_RS22955 at 4372.787 kb on - strand, within LU632_RS22955 at 4372.787 kb on - strand, within LU632_RS22955 at 4372.804 kb on - strand, within LU632_RS22955 at 4372.909 kb on + strand, within LU632_RS22955 at 4372.909 kb on + strand, within LU632_RS22955 at 4372.909 kb on + strand, within LU632_RS22955 at 4372.910 kb on - strand, within LU632_RS22955 at 4373.099 kb on - strand, within LU632_RS22955 at 4373.103 kb on + strand, within LU632_RS22955 at 4373.262 kb on + strand, within LU632_RS22955 at 4373.301 kb on + strand, within LU632_RS22955 at 4373.406 kb on - strand, within LU632_RS22955 at 4373.406 kb on - strand, within LU632_RS22955 at 4373.549 kb on - strand, within LU632_RS22955 at 4373.549 kb on - strand, within LU632_RS22955 at 4373.700 kb on - strand, within LU632_RS22955 at 4373.700 kb on - strand, within LU632_RS22955 at 4373.876 kb on + strand, within LU632_RS22955 at 4373.877 kb on - strand, within LU632_RS22955 at 4374.034 kb on - strand, within LU632_RS22955 at 4374.034 kb on - strand, within LU632_RS22955 at 4374.034 kb on - strand, within LU632_RS22955 at 4374.142 kb on - strand, within LU632_RS22955 at 4374.144 kb on + strand, within LU632_RS22955 at 4374.144 kb on + strand, within LU632_RS22955 at 4374.459 kb on - strand, within LU632_RS22955 at 4374.459 kb on - strand, within LU632_RS22955 at 4374.510 kb on - strand, within LU632_RS22955 at 4374.513 kb on + strand, within LU632_RS22955 at 4374.513 kb on + strand, within LU632_RS22955 at 4374.514 kb on - strand, within LU632_RS22955 at 4374.514 kb on - strand, within LU632_RS22955 at 4374.553 kb on - strand, within LU632_RS22955 at 4374.843 kb on + strand at 4374.868 kb on + strand at 4374.937 kb on + strand at 4374.938 kb on - strand at 4374.938 kb on - strand at 4374.941 kb on + strand at 4374.941 kb on + strand at 4374.941 kb on + strand at 4374.950 kb on + strand at 4374.951 kb on - strand at 4374.963 kb on + strand at 4374.963 kb on + strand at 4374.967 kb on - strand, within feoA at 4375.177 kb on - strand at 4375.177 kb on - strand at 4375.179 kb on + strand at 4375.179 kb on + strand at 4375.203 kb on - strand at 4375.299 kb on + strand at 4375.360 kb on + strand at 4375.407 kb on + strand at 4375.422 kb on - strand, within feoB at 4375.480 kb on - strand, within feoB at 4375.486 kb on + strand, within feoB at 4375.539 kb on + strand, within feoB at 4375.540 kb on - strand, within feoB at 4375.566 kb on + strand, within feoB at 4375.567 kb on - strand, within feoB at 4375.614 kb on + strand, within feoB
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,371,662 + -0.7 4,371,662 + +1.0 4,371,680 + -1.2 4,371,682 + -1.9 4,371,682 + -0.3 4,371,682 + -0.4 4,371,682 + -0.2 4,371,683 - -0.3 4,371,747 + LU632_RS22945 0.34 -0.4 4,371,878 - +0.4 4,371,913 - -0.1 4,372,046 - greB LU632_RS22950 0.30 +0.1 4,372,051 + greB LU632_RS22950 0.31 -0.3 4,372,051 + greB LU632_RS22950 0.31 -0.0 4,372,052 - greB LU632_RS22950 0.31 -0.1 4,372,052 - greB LU632_RS22950 0.31 +0.0 4,372,093 + greB LU632_RS22950 0.39 +0.4 4,372,094 - greB LU632_RS22950 0.40 -0.2 4,372,132 + greB LU632_RS22950 0.47 -0.3 4,372,246 - greB LU632_RS22950 0.71 +2.0 4,372,252 + greB LU632_RS22950 0.72 -1.0 4,372,252 + greB LU632_RS22950 0.72 +1.6 4,372,252 + greB LU632_RS22950 0.72 -0.9 4,372,310 + greB LU632_RS22950 0.85 +0.1 4,372,310 + greB LU632_RS22950 0.85 -0.8 4,372,310 + greB LU632_RS22950 0.85 +0.9 4,372,311 - greB LU632_RS22950 0.85 -0.1 4,372,311 - greB LU632_RS22950 0.85 -0.8 4,372,311 - greB LU632_RS22950 0.85 -0.8 4,372,311 - greB LU632_RS22950 0.85 -0.8 4,372,311 - greB LU632_RS22950 0.85 -0.5 4,372,311 - greB LU632_RS22950 0.85 -0.5 4,372,323 + greB LU632_RS22950 0.87 +0.1 4,372,348 + +0.1 4,372,349 - +0.4 4,372,392 + -0.6 4,372,393 - +0.2 4,372,443 + +0.3 4,372,443 + -0.4 4,372,444 - +0.2 4,372,444 - +0.3 4,372,444 - +1.4 4,372,471 + -0.5 4,372,471 + -1.1 4,372,504 - -0.2 4,372,599 + -0.7 4,372,755 + LU632_RS22955 0.12 -0.8 4,372,786 + LU632_RS22955 0.13 +0.7 4,372,786 + LU632_RS22955 0.13 -1.6 4,372,786 + LU632_RS22955 0.13 +0.4 4,372,786 + LU632_RS22955 0.13 +0.8 4,372,786 + LU632_RS22955 0.13 -0.7 4,372,787 - LU632_RS22955 0.13 +0.1 4,372,787 - LU632_RS22955 0.13 -1.1 4,372,787 - LU632_RS22955 0.13 -0.7 4,372,804 - LU632_RS22955 0.14 -0.9 4,372,909 + LU632_RS22955 0.19 -0.3 4,372,909 + LU632_RS22955 0.19 +2.1 4,372,909 + LU632_RS22955 0.19 -0.4 4,372,910 - LU632_RS22955 0.19 -1.1 4,373,099 - LU632_RS22955 0.27 +0.8 4,373,103 + LU632_RS22955 0.27 +0.4 4,373,262 + LU632_RS22955 0.34 -0.3 4,373,301 + LU632_RS22955 0.36 -1.6 4,373,406 - LU632_RS22955 0.40 -0.0 4,373,406 - LU632_RS22955 0.40 -1.2 4,373,549 - LU632_RS22955 0.46 -2.5 4,373,549 - LU632_RS22955 0.46 -0.6 4,373,700 - LU632_RS22955 0.53 +0.2 4,373,700 - LU632_RS22955 0.53 +0.0 4,373,876 + LU632_RS22955 0.60 -0.2 4,373,877 - LU632_RS22955 0.60 +0.9 4,374,034 - LU632_RS22955 0.67 -0.3 4,374,034 - LU632_RS22955 0.67 -0.6 4,374,034 - LU632_RS22955 0.67 -0.8 4,374,142 - LU632_RS22955 0.72 -0.0 4,374,144 + LU632_RS22955 0.72 +0.6 4,374,144 + LU632_RS22955 0.72 +0.6 4,374,459 - LU632_RS22955 0.85 -0.6 4,374,459 - LU632_RS22955 0.85 +1.0 4,374,510 - LU632_RS22955 0.88 -0.6 4,374,513 + LU632_RS22955 0.88 -0.6 4,374,513 + LU632_RS22955 0.88 -0.9 4,374,514 - LU632_RS22955 0.88 -0.2 4,374,514 - LU632_RS22955 0.88 -0.1 4,374,553 - LU632_RS22955 0.90 +0.2 4,374,843 + +0.8 4,374,868 + -0.8 4,374,937 + -0.0 4,374,938 - +0.2 4,374,938 - -0.2 4,374,941 + -0.8 4,374,941 + +1.4 4,374,941 + -0.5 4,374,950 + -0.1 4,374,951 - +0.6 4,374,963 + -0.6 4,374,963 + -0.3 4,374,967 - feoA LU632_RS22960 0.11 -1.1 4,375,177 - -0.3 4,375,177 - -0.0 4,375,179 + -0.2 4,375,179 + -0.6 4,375,203 - -0.2 4,375,299 + -0.0 4,375,360 + +1.4 4,375,407 + -0.0 4,375,422 - feoB LU632_RS22965 0.11 +1.4 4,375,480 - feoB LU632_RS22965 0.13 +0.8 4,375,486 + feoB LU632_RS22965 0.13 +0.4 4,375,539 + feoB LU632_RS22965 0.16 +0.4 4,375,540 - feoB LU632_RS22965 0.16 +0.5 4,375,566 + feoB LU632_RS22965 0.17 +0.7 4,375,567 - feoB LU632_RS22965 0.17 -0.9 4,375,614 + feoB LU632_RS22965 0.19 +0.4
Or see this region's nucleotide sequence