Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22510 and zntR are separated by 137 nucleotides zntR and LU632_RS22520 overlap by 1 nucleotides LU632_RS22520 and rplQ are separated by 104 nucleotides rplQ and rpoA are separated by 40 nucleotides
LU632_RS22510: LU632_RS22510 - IS1 family transposase, at 4,301,325 to 4,302,021
_RS22510
LU632_RS22515: zntR - Zn(2+)-responsive transcriptional regulator, at 4,302,159 to 4,302,581
zntR
LU632_RS22520: LU632_RS22520 - DUF1992 domain-containing protein, at 4,302,581 to 4,302,940
_RS22520
LU632_RS22525: rplQ - 50S ribosomal protein L17, at 4,303,045 to 4,303,431
rplQ
LU632_RS22530: rpoA - DNA-directed RNA polymerase subunit alpha, at 4,303,472 to 4,304,461
rpoA
Position (kb) 4302
4303 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4302.070 kb on - strand at 4302.173 kb on + strand at 4302.173 kb on + strand at 4302.173 kb on + strand at 4302.173 kb on + strand at 4302.176 kb on + strand at 4302.176 kb on + strand at 4302.177 kb on - strand at 4302.177 kb on - strand at 4302.192 kb on + strand at 4302.276 kb on - strand, within zntR at 4302.276 kb on - strand, within zntR at 4302.283 kb on - strand, within zntR at 4302.291 kb on - strand, within zntR at 4302.330 kb on - strand, within zntR at 4302.374 kb on + strand, within zntR at 4302.374 kb on + strand, within zntR at 4302.378 kb on + strand, within zntR at 4302.381 kb on + strand, within zntR at 4302.381 kb on + strand, within zntR at 4302.382 kb on - strand, within zntR at 4302.382 kb on - strand, within zntR at 4302.382 kb on - strand, within zntR at 4302.382 kb on - strand, within zntR at 4302.405 kb on - strand, within zntR at 4302.461 kb on + strand, within zntR at 4302.462 kb on - strand, within zntR at 4302.464 kb on - strand, within zntR at 4302.575 kb on + strand at 4302.576 kb on - strand at 4302.576 kb on - strand at 4302.578 kb on - strand at 4302.582 kb on + strand at 4302.583 kb on - strand at 4302.583 kb on - strand at 4302.608 kb on + strand at 4302.608 kb on + strand at 4302.609 kb on - strand at 4302.621 kb on + strand, within LU632_RS22520 at 4302.621 kb on + strand, within LU632_RS22520 at 4302.633 kb on - strand, within LU632_RS22520 at 4302.663 kb on - strand, within LU632_RS22520 at 4302.715 kb on + strand, within LU632_RS22520 at 4302.715 kb on + strand, within LU632_RS22520 at 4302.716 kb on - strand, within LU632_RS22520 at 4302.755 kb on + strand, within LU632_RS22520 at 4302.944 kb on - strand at 4302.944 kb on - strand at 4302.996 kb on + strand at 4302.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,302,070 - +0.1 4,302,173 + +0.8 4,302,173 + -0.6 4,302,173 + -1.9 4,302,173 + -0.2 4,302,176 + +0.5 4,302,176 + -1.9 4,302,177 - +1.0 4,302,177 - -0.5 4,302,192 + -0.5 4,302,276 - zntR LU632_RS22515 0.28 +1.4 4,302,276 - zntR LU632_RS22515 0.28 -0.1 4,302,283 - zntR LU632_RS22515 0.29 -0.8 4,302,291 - zntR LU632_RS22515 0.31 -0.6 4,302,330 - zntR LU632_RS22515 0.40 +1.0 4,302,374 + zntR LU632_RS22515 0.51 +0.3 4,302,374 + zntR LU632_RS22515 0.51 -1.2 4,302,378 + zntR LU632_RS22515 0.52 +0.2 4,302,381 + zntR LU632_RS22515 0.52 +0.3 4,302,381 + zntR LU632_RS22515 0.52 +1.4 4,302,382 - zntR LU632_RS22515 0.53 +0.7 4,302,382 - zntR LU632_RS22515 0.53 +2.0 4,302,382 - zntR LU632_RS22515 0.53 +0.1 4,302,382 - zntR LU632_RS22515 0.53 +0.6 4,302,405 - zntR LU632_RS22515 0.58 -0.7 4,302,461 + zntR LU632_RS22515 0.71 -0.4 4,302,462 - zntR LU632_RS22515 0.72 -0.5 4,302,464 - zntR LU632_RS22515 0.72 +0.6 4,302,575 + +1.0 4,302,576 - +0.1 4,302,576 - -0.7 4,302,578 - -0.2 4,302,582 + +0.4 4,302,583 - -1.6 4,302,583 - +0.2 4,302,608 + -1.0 4,302,608 + +2.7 4,302,609 - -0.3 4,302,621 + LU632_RS22520 0.11 +1.0 4,302,621 + LU632_RS22520 0.11 -1.0 4,302,633 - LU632_RS22520 0.14 +0.3 4,302,663 - LU632_RS22520 0.23 -0.2 4,302,715 + LU632_RS22520 0.37 -0.1 4,302,715 + LU632_RS22520 0.37 +0.0 4,302,716 - LU632_RS22520 0.38 -0.8 4,302,755 + LU632_RS22520 0.48 -1.3 4,302,944 - +0.6 4,302,944 - +0.1 4,302,996 + +0.4 4,302,997 - +0.6
Or see this region's nucleotide sequence