Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trkA and LU632_RS22490 are separated by 152 nucleotides LU632_RS22490 and LU632_RS22495 are separated by 226 nucleotides LU632_RS22495 and LU632_RS22500 overlap by 32 nucleotides
LU632_RS22485: trkA - Trk system potassium transporter TrkA, at 4,296,579 to 4,297,955
trkA
LU632_RS22490: LU632_RS22490 - transposase, at 4,298,108 to 4,298,316
_RS22490
LU632_RS22495: LU632_RS22495 - hypothetical protein, at 4,298,543 to 4,298,779
_RS22495
LU632_RS22500: LU632_RS22500 - DNA adenine methylase, at 4,298,748 to 4,299,533
_RS22500
Position (kb) 4298
4299 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4297.557 kb on - strand, within trkA at 4297.557 kb on - strand, within trkA at 4297.566 kb on - strand, within trkA at 4297.574 kb on + strand, within trkA at 4297.607 kb on - strand, within trkA at 4297.652 kb on - strand, within trkA at 4297.663 kb on + strand, within trkA at 4297.663 kb on + strand, within trkA at 4297.664 kb on - strand, within trkA at 4297.668 kb on - strand, within trkA at 4297.676 kb on + strand, within trkA at 4297.676 kb on + strand, within trkA at 4297.696 kb on + strand, within trkA at 4297.697 kb on - strand, within trkA at 4297.781 kb on + strand, within trkA at 4297.782 kb on - strand, within trkA at 4297.800 kb on - strand, within trkA at 4297.805 kb on + strand, within trkA at 4297.835 kb on - strand at 4297.835 kb on - strand at 4297.848 kb on - strand at 4297.959 kb on - strand at 4297.968 kb on + strand at 4298.075 kb on - strand at 4298.075 kb on - strand at 4298.075 kb on - strand at 4298.398 kb on - strand at 4298.398 kb on - strand at 4298.787 kb on + strand at 4298.907 kb on - strand, within LU632_RS22500 at 4299.013 kb on + strand, within LU632_RS22500 at 4299.045 kb on + strand, within LU632_RS22500 at 4299.130 kb on - strand, within LU632_RS22500 at 4299.130 kb on - strand, within LU632_RS22500 at 4299.207 kb on + strand, within LU632_RS22500 at 4299.234 kb on + strand, within LU632_RS22500 at 4299.234 kb on + strand, within LU632_RS22500 at 4299.235 kb on - strand, within LU632_RS22500 at 4299.235 kb on - strand, within LU632_RS22500 at 4299.305 kb on + strand, within LU632_RS22500 at 4299.448 kb on + strand, within LU632_RS22500 at 4299.448 kb on + strand, within LU632_RS22500 at 4299.449 kb on - strand, within LU632_RS22500 at 4299.456 kb on - strand at 4299.556 kb on + strand at 4299.557 kb on - strand at 4299.557 kb on - strand at 4299.579 kb on - strand at 4299.601 kb on + strand at 4299.611 kb on + strand at 4299.611 kb on + strand at 4299.611 kb on + strand at 4299.612 kb on - strand at 4299.620 kb on - strand at 4299.639 kb on - strand at 4299.646 kb on - strand at 4299.689 kb on + strand at 4299.718 kb on + strand at 4299.718 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,297,557 - trkA LU632_RS22485 0.71 +0.5 4,297,557 - trkA LU632_RS22485 0.71 +0.3 4,297,566 - trkA LU632_RS22485 0.72 +0.5 4,297,574 + trkA LU632_RS22485 0.72 -0.2 4,297,607 - trkA LU632_RS22485 0.75 -0.4 4,297,652 - trkA LU632_RS22485 0.78 -1.3 4,297,663 + trkA LU632_RS22485 0.79 +1.4 4,297,663 + trkA LU632_RS22485 0.79 +0.8 4,297,664 - trkA LU632_RS22485 0.79 -0.7 4,297,668 - trkA LU632_RS22485 0.79 -1.3 4,297,676 + trkA LU632_RS22485 0.80 -0.6 4,297,676 + trkA LU632_RS22485 0.80 -0.4 4,297,696 + trkA LU632_RS22485 0.81 -0.0 4,297,697 - trkA LU632_RS22485 0.81 -1.2 4,297,781 + trkA LU632_RS22485 0.87 -0.8 4,297,782 - trkA LU632_RS22485 0.87 -0.0 4,297,800 - trkA LU632_RS22485 0.89 -0.7 4,297,805 + trkA LU632_RS22485 0.89 -0.2 4,297,835 - -0.5 4,297,835 - -0.6 4,297,848 - +2.0 4,297,959 - -1.0 4,297,968 + +0.2 4,298,075 - -1.2 4,298,075 - -0.3 4,298,075 - -0.1 4,298,398 - +0.1 4,298,398 - -0.3 4,298,787 + +0.8 4,298,907 - LU632_RS22500 0.20 -0.2 4,299,013 + LU632_RS22500 0.34 -0.1 4,299,045 + LU632_RS22500 0.38 +1.4 4,299,130 - LU632_RS22500 0.49 -1.3 4,299,130 - LU632_RS22500 0.49 -0.0 4,299,207 + LU632_RS22500 0.58 +0.6 4,299,234 + LU632_RS22500 0.62 -1.3 4,299,234 + LU632_RS22500 0.62 +0.4 4,299,235 - LU632_RS22500 0.62 +0.1 4,299,235 - LU632_RS22500 0.62 -0.3 4,299,305 + LU632_RS22500 0.71 -0.4 4,299,448 + LU632_RS22500 0.89 -0.1 4,299,448 + LU632_RS22500 0.89 +0.2 4,299,449 - LU632_RS22500 0.89 -0.0 4,299,456 - +0.1 4,299,556 + +0.0 4,299,557 - +0.0 4,299,557 - -1.6 4,299,579 - -0.1 4,299,601 + -0.7 4,299,611 + -0.8 4,299,611 + -0.4 4,299,611 + -0.3 4,299,612 - -1.3 4,299,620 - -0.1 4,299,639 - -2.0 4,299,646 - +0.1 4,299,689 + -0.9 4,299,718 + +0.3 4,299,718 + -0.1
Or see this region's nucleotide sequence