Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zur and LU632_RS22300 are separated by 122 nucleotides LU632_RS22300 and LU632_RS22305 are separated by 262 nucleotides LU632_RS22305 and LU632_RS22310 overlap by 68 nucleotides LU632_RS22310 and lexA are separated by 91 nucleotides
LU632_RS22295: zur - zinc uptake transcriptional repressor Zur, at 4,259,240 to 4,259,755
zur
LU632_RS22300: LU632_RS22300 - CsbD family protein, at 4,259,878 to 4,260,082
_RS22300
LU632_RS22305: LU632_RS22305 - MATE family efflux transporter DinF, at 4,260,345 to 4,260,545
_RS22305
LU632_RS22310: LU632_RS22310 - hypothetical protein, at 4,260,478 to 4,260,723
_RS22310
LU632_RS22315: lexA - transcriptional repressor LexA, at 4,260,815 to 4,261,423
lexA
Position (kb) 4259
4260
4261 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4258.879 kb on + strand at 4258.944 kb on + strand at 4259.047 kb on - strand at 4259.109 kb on + strand at 4259.128 kb on - strand at 4259.161 kb on + strand at 4259.248 kb on - strand at 4259.248 kb on - strand at 4259.248 kb on - strand at 4259.248 kb on - strand at 4259.466 kb on + strand, within zur at 4259.467 kb on - strand, within zur at 4259.467 kb on - strand, within zur at 4259.492 kb on + strand, within zur at 4259.493 kb on - strand, within zur at 4259.542 kb on + strand, within zur at 4259.542 kb on + strand, within zur at 4259.542 kb on + strand, within zur at 4259.542 kb on + strand, within zur at 4259.542 kb on + strand, within zur at 4259.543 kb on - strand, within zur at 4259.543 kb on - strand, within zur at 4259.543 kb on - strand, within zur at 4259.543 kb on - strand, within zur at 4259.566 kb on - strand, within zur at 4259.598 kb on + strand, within zur at 4259.639 kb on - strand, within zur at 4259.647 kb on + strand, within zur at 4259.777 kb on - strand at 4259.796 kb on - strand at 4259.800 kb on - strand at 4260.005 kb on - strand, within LU632_RS22300 at 4260.006 kb on + strand, within LU632_RS22300 at 4260.006 kb on + strand, within LU632_RS22300 at 4260.007 kb on - strand, within LU632_RS22300 at 4260.007 kb on - strand, within LU632_RS22300 at 4260.305 kb on + strand at 4260.451 kb on + strand, within LU632_RS22305 at 4260.451 kb on + strand, within LU632_RS22305 at 4260.452 kb on - strand, within LU632_RS22305 at 4260.452 kb on - strand, within LU632_RS22305 at 4260.455 kb on + strand, within LU632_RS22305 at 4260.456 kb on - strand, within LU632_RS22305 at 4260.473 kb on + strand, within LU632_RS22305 at 4260.510 kb on - strand at 4260.529 kb on + strand at 4260.530 kb on - strand at 4260.530 kb on - strand at 4260.534 kb on + strand at 4260.534 kb on + strand at 4260.534 kb on + strand at 4260.535 kb on - strand at 4260.535 kb on - strand at 4260.535 kb on - strand at 4260.535 kb on - strand at 4260.535 kb on - strand at 4260.536 kb on + strand at 4260.537 kb on - strand at 4260.537 kb on - strand at 4260.590 kb on + strand, within LU632_RS22310 at 4260.590 kb on + strand, within LU632_RS22310 at 4260.591 kb on - strand, within LU632_RS22310 at 4260.604 kb on - strand, within LU632_RS22310 at 4260.604 kb on - strand, within LU632_RS22310 at 4260.604 kb on - strand, within LU632_RS22310 at 4260.654 kb on + strand, within LU632_RS22310 at 4260.655 kb on - strand, within LU632_RS22310 at 4260.655 kb on - strand, within LU632_RS22310 at 4260.660 kb on - strand, within LU632_RS22310 at 4260.660 kb on - strand, within LU632_RS22310 at 4260.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,258,879 + -0.4 4,258,944 + +0.6 4,259,047 - +0.3 4,259,109 + +1.0 4,259,128 - -0.2 4,259,161 + +0.0 4,259,248 - -0.9 4,259,248 - +0.3 4,259,248 - -0.7 4,259,248 - +1.4 4,259,466 + zur LU632_RS22295 0.44 +0.6 4,259,467 - zur LU632_RS22295 0.44 +0.0 4,259,467 - zur LU632_RS22295 0.44 +3.4 4,259,492 + zur LU632_RS22295 0.49 +0.1 4,259,493 - zur LU632_RS22295 0.49 -0.8 4,259,542 + zur LU632_RS22295 0.59 -0.2 4,259,542 + zur LU632_RS22295 0.59 +0.5 4,259,542 + zur LU632_RS22295 0.59 -0.4 4,259,542 + zur LU632_RS22295 0.59 -0.8 4,259,542 + zur LU632_RS22295 0.59 -1.5 4,259,543 - zur LU632_RS22295 0.59 -1.6 4,259,543 - zur LU632_RS22295 0.59 -0.0 4,259,543 - zur LU632_RS22295 0.59 -0.1 4,259,543 - zur LU632_RS22295 0.59 -0.6 4,259,566 - zur LU632_RS22295 0.63 -1.0 4,259,598 + zur LU632_RS22295 0.69 -0.3 4,259,639 - zur LU632_RS22295 0.77 +2.4 4,259,647 + zur LU632_RS22295 0.79 -0.2 4,259,777 - -1.6 4,259,796 - -0.2 4,259,800 - -0.8 4,260,005 - LU632_RS22300 0.62 +0.7 4,260,006 + LU632_RS22300 0.62 +0.2 4,260,006 + LU632_RS22300 0.62 +0.3 4,260,007 - LU632_RS22300 0.63 -0.6 4,260,007 - LU632_RS22300 0.63 -0.2 4,260,305 + -0.7 4,260,451 + LU632_RS22305 0.53 -0.9 4,260,451 + LU632_RS22305 0.53 -1.0 4,260,452 - LU632_RS22305 0.53 -0.2 4,260,452 - LU632_RS22305 0.53 +0.3 4,260,455 + LU632_RS22305 0.55 +0.2 4,260,456 - LU632_RS22305 0.55 -0.4 4,260,473 + LU632_RS22305 0.64 -0.4 4,260,510 - -0.2 4,260,529 + -1.3 4,260,530 - -1.0 4,260,530 - -1.0 4,260,534 + +0.2 4,260,534 + +0.7 4,260,534 + -0.6 4,260,535 - -0.6 4,260,535 - +0.3 4,260,535 - -0.4 4,260,535 - -0.3 4,260,535 - +0.5 4,260,536 + -1.1 4,260,537 - -0.2 4,260,537 - +0.1 4,260,590 + LU632_RS22310 0.46 -0.0 4,260,590 + LU632_RS22310 0.46 -0.7 4,260,591 - LU632_RS22310 0.46 -0.9 4,260,604 - LU632_RS22310 0.51 -1.8 4,260,604 - LU632_RS22310 0.51 -0.6 4,260,604 - LU632_RS22310 0.51 -1.2 4,260,654 + LU632_RS22310 0.72 -0.0 4,260,655 - LU632_RS22310 0.72 +1.4 4,260,655 - LU632_RS22310 0.72 -0.2 4,260,660 - LU632_RS22310 0.74 +1.1 4,260,660 - LU632_RS22310 0.74 -0.5 4,260,817 - +0.0
Or see this region's nucleotide sequence