Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21570 and LU632_RS21575 are separated by 136 nucleotides LU632_RS21575 and LU632_RS21580 are separated by 44 nucleotides LU632_RS21580 and traF are separated by 52 nucleotides traF and traN are separated by 273 nucleotides
LU632_RS21570: LU632_RS21570 - pyridoxamine 5'-phosphate oxidase family protein, at 4,128,723 to 4,129,247
_RS21570
LU632_RS21575: LU632_RS21575 - Rpn family recombination-promoting nuclease/putative transposase, at 4,129,384 to 4,129,754
_RS21575
LU632_RS21580: LU632_RS21580 - type II toxin-antitoxin system RelE/ParE family toxin, at 4,129,799 to 4,130,080
_RS21580
LU632_RS21585: traF - conjugal transfer protein TraF, at 4,130,133 to 4,130,621
traF
LU632_RS21590: traN - conjugal transfer protein TraN, at 4,130,895 to 4,131,238
traN
Position (kb) 4129
4130
4131 Strain fitness (log2 ratio) -2
-1
0
1 at 4128.826 kb on - strand, within LU632_RS21570 at 4128.901 kb on + strand, within LU632_RS21570 at 4128.902 kb on - strand, within LU632_RS21570 at 4128.902 kb on - strand, within LU632_RS21570 at 4129.022 kb on + strand, within LU632_RS21570 at 4129.023 kb on - strand, within LU632_RS21570 at 4129.023 kb on - strand, within LU632_RS21570 at 4129.035 kb on + strand, within LU632_RS21570 at 4129.036 kb on - strand, within LU632_RS21570 at 4129.036 kb on - strand, within LU632_RS21570 at 4129.061 kb on - strand, within LU632_RS21570 at 4129.091 kb on - strand, within LU632_RS21570 at 4129.091 kb on - strand, within LU632_RS21570 at 4129.162 kb on + strand, within LU632_RS21570 at 4129.251 kb on + strand at 4129.254 kb on + strand at 4129.275 kb on + strand at 4129.275 kb on + strand at 4129.275 kb on + strand at 4129.276 kb on - strand at 4129.276 kb on - strand at 4129.354 kb on + strand at 4129.452 kb on + strand, within LU632_RS21575 at 4129.611 kb on + strand, within LU632_RS21575 at 4129.612 kb on - strand, within LU632_RS21575 at 4129.612 kb on - strand, within LU632_RS21575 at 4129.678 kb on - strand, within LU632_RS21575 at 4129.718 kb on + strand at 4129.791 kb on - strand at 4129.806 kb on - strand at 4129.858 kb on + strand, within LU632_RS21580 at 4129.989 kb on - strand, within LU632_RS21580 at 4129.989 kb on - strand, within LU632_RS21580 at 4130.127 kb on - strand at 4130.160 kb on - strand at 4130.219 kb on + strand, within traF at 4130.222 kb on + strand, within traF at 4130.222 kb on + strand, within traF at 4130.223 kb on - strand, within traF at 4130.223 kb on - strand, within traF at 4130.265 kb on + strand, within traF at 4130.304 kb on - strand, within traF at 4130.304 kb on - strand, within traF at 4130.416 kb on + strand, within traF at 4130.417 kb on - strand, within traF at 4130.496 kb on + strand, within traF at 4130.918 kb on + strand at 4130.918 kb on + strand at 4130.918 kb on + strand at 4130.933 kb on + strand, within traN at 4131.014 kb on + strand, within traN
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 4,128,826 - LU632_RS21570 0.20 -0.7 4,128,901 + LU632_RS21570 0.34 -0.5 4,128,902 - LU632_RS21570 0.34 +0.2 4,128,902 - LU632_RS21570 0.34 -1.1 4,129,022 + LU632_RS21570 0.57 -1.0 4,129,023 - LU632_RS21570 0.57 -0.7 4,129,023 - LU632_RS21570 0.57 +0.9 4,129,035 + LU632_RS21570 0.59 +0.2 4,129,036 - LU632_RS21570 0.60 +0.2 4,129,036 - LU632_RS21570 0.60 -0.1 4,129,061 - LU632_RS21570 0.64 +0.4 4,129,091 - LU632_RS21570 0.70 -0.1 4,129,091 - LU632_RS21570 0.70 +1.0 4,129,162 + LU632_RS21570 0.84 -0.8 4,129,251 + -0.5 4,129,254 + +0.2 4,129,275 + +0.3 4,129,275 + +0.1 4,129,275 + -0.4 4,129,276 - +0.1 4,129,276 - -0.1 4,129,354 + +0.9 4,129,452 + LU632_RS21575 0.18 +0.2 4,129,611 + LU632_RS21575 0.61 -0.5 4,129,612 - LU632_RS21575 0.61 -0.9 4,129,612 - LU632_RS21575 0.61 +0.5 4,129,678 - LU632_RS21575 0.79 -0.7 4,129,718 + -0.4 4,129,791 - -0.7 4,129,806 - -1.0 4,129,858 + LU632_RS21580 0.21 -0.5 4,129,989 - LU632_RS21580 0.67 -0.3 4,129,989 - LU632_RS21580 0.67 -2.3 4,130,127 - +0.5 4,130,160 - -0.6 4,130,219 + traF LU632_RS21585 0.18 +0.6 4,130,222 + traF LU632_RS21585 0.18 -0.1 4,130,222 + traF LU632_RS21585 0.18 +1.3 4,130,223 - traF LU632_RS21585 0.18 -0.0 4,130,223 - traF LU632_RS21585 0.18 -0.2 4,130,265 + traF LU632_RS21585 0.27 -0.7 4,130,304 - traF LU632_RS21585 0.35 -0.3 4,130,304 - traF LU632_RS21585 0.35 -0.0 4,130,416 + traF LU632_RS21585 0.58 -1.4 4,130,417 - traF LU632_RS21585 0.58 +0.2 4,130,496 + traF LU632_RS21585 0.74 -0.6 4,130,918 + -0.5 4,130,918 + +0.3 4,130,918 + +0.3 4,130,933 + traN LU632_RS21590 0.11 -0.4 4,131,014 + traN LU632_RS21590 0.35 -0.3
Or see this region's nucleotide sequence