Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS19825 and LU632_RS19830 are separated by 30 nucleotides LU632_RS19830 and rcsF are separated by 141 nucleotides rcsF and tsaA overlap by 4 nucleotides tsaA and proS are separated by 109 nucleotides
LU632_RS19825: LU632_RS19825 - methionine ABC transporter permease MetI, at 3,768,023 to 3,768,676
_RS19825
LU632_RS19830: LU632_RS19830 - MetQ/NlpA family lipoprotein, at 3,768,707 to 3,769,522
_RS19830
LU632_RS19835: rcsF - Rcs stress response system protein RcsF, at 3,769,664 to 3,770,068
rcsF
LU632_RS19840: tsaA - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 3,770,065 to 3,770,772
tsaA
LU632_RS19845: proS - proline--tRNA ligase, at 3,770,882 to 3,772,600
proS
Position (kb) 3769
3770
3771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3768.670 kb on + strand at 3768.674 kb on + strand at 3768.685 kb on - strand at 3768.685 kb on - strand at 3768.706 kb on + strand at 3768.754 kb on + strand at 3768.769 kb on - strand at 3768.803 kb on - strand, within LU632_RS19830 at 3768.804 kb on + strand, within LU632_RS19830 at 3768.849 kb on + strand, within LU632_RS19830 at 3769.008 kb on - strand, within LU632_RS19830 at 3769.008 kb on - strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.009 kb on + strand, within LU632_RS19830 at 3769.010 kb on - strand, within LU632_RS19830 at 3769.309 kb on + strand, within LU632_RS19830 at 3769.309 kb on + strand, within LU632_RS19830 at 3769.309 kb on + strand, within LU632_RS19830 at 3769.312 kb on + strand, within LU632_RS19830 at 3769.312 kb on + strand, within LU632_RS19830 at 3769.315 kb on + strand, within LU632_RS19830 at 3769.315 kb on + strand, within LU632_RS19830 at 3769.315 kb on + strand, within LU632_RS19830 at 3769.316 kb on - strand, within LU632_RS19830 at 3769.316 kb on - strand, within LU632_RS19830 at 3769.319 kb on + strand, within LU632_RS19830 at 3769.320 kb on - strand, within LU632_RS19830 at 3769.320 kb on - strand, within LU632_RS19830 at 3769.414 kb on + strand, within LU632_RS19830 at 3769.531 kb on + strand at 3769.603 kb on + strand at 3769.636 kb on + strand at 3769.674 kb on + strand at 3769.723 kb on + strand, within rcsF at 3769.731 kb on - strand, within rcsF at 3769.732 kb on + strand, within rcsF at 3769.732 kb on + strand, within rcsF at 3769.784 kb on - strand, within rcsF at 3769.921 kb on + strand, within rcsF at 3769.958 kb on - strand, within rcsF at 3769.958 kb on - strand, within rcsF at 3769.995 kb on + strand, within rcsF at 3769.996 kb on - strand, within rcsF at 3770.148 kb on + strand, within tsaA at 3770.177 kb on + strand, within tsaA at 3770.177 kb on + strand, within tsaA at 3770.188 kb on + strand, within tsaA at 3770.188 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.232 kb on + strand, within tsaA at 3770.233 kb on - strand, within tsaA at 3770.233 kb on - strand, within tsaA at 3770.233 kb on - strand, within tsaA at 3770.233 kb on - strand, within tsaA at 3770.233 kb on - strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.234 kb on + strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.235 kb on - strand, within tsaA at 3770.263 kb on - strand, within tsaA at 3770.322 kb on - strand, within tsaA at 3770.469 kb on + strand, within tsaA at 3770.476 kb on + strand, within tsaA at 3770.535 kb on + strand, within tsaA at 3770.535 kb on + strand, within tsaA at 3770.535 kb on + strand, within tsaA at 3770.535 kb on + strand, within tsaA at 3770.535 kb on + strand, within tsaA at 3770.536 kb on - strand, within tsaA at 3770.536 kb on - strand, within tsaA at 3770.536 kb on - strand, within tsaA at 3770.536 kb on - strand, within tsaA at 3770.623 kb on - strand, within tsaA at 3770.659 kb on + strand, within tsaA at 3770.812 kb on + strand at 3770.812 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 3,768,670 + -1.3 3,768,674 + -0.2 3,768,685 - -1.8 3,768,685 - -0.8 3,768,706 + -1.4 3,768,754 + -2.1 3,768,769 - -2.4 3,768,803 - LU632_RS19830 0.12 -1.9 3,768,804 + LU632_RS19830 0.12 -0.7 3,768,849 + LU632_RS19830 0.17 -2.0 3,769,008 - LU632_RS19830 0.37 -1.9 3,769,008 - LU632_RS19830 0.37 -0.7 3,769,009 + LU632_RS19830 0.37 -0.8 3,769,009 + LU632_RS19830 0.37 -2.2 3,769,009 + LU632_RS19830 0.37 -0.8 3,769,009 + LU632_RS19830 0.37 -0.2 3,769,009 + LU632_RS19830 0.37 -3.7 3,769,009 + LU632_RS19830 0.37 -1.2 3,769,010 - LU632_RS19830 0.37 -0.4 3,769,309 + LU632_RS19830 0.74 -1.8 3,769,309 + LU632_RS19830 0.74 -1.1 3,769,309 + LU632_RS19830 0.74 -0.9 3,769,312 + LU632_RS19830 0.74 -1.5 3,769,312 + LU632_RS19830 0.74 -1.6 3,769,315 + LU632_RS19830 0.75 +1.8 3,769,315 + LU632_RS19830 0.75 +0.8 3,769,315 + LU632_RS19830 0.75 -1.8 3,769,316 - LU632_RS19830 0.75 -0.8 3,769,316 - LU632_RS19830 0.75 -1.4 3,769,319 + LU632_RS19830 0.75 -1.0 3,769,320 - LU632_RS19830 0.75 +1.2 3,769,320 - LU632_RS19830 0.75 -1.9 3,769,414 + LU632_RS19830 0.87 -1.9 3,769,531 + +0.1 3,769,603 + +0.4 3,769,636 + -0.7 3,769,674 + +0.5 3,769,723 + rcsF LU632_RS19835 0.15 -0.3 3,769,731 - rcsF LU632_RS19835 0.17 -0.4 3,769,732 + rcsF LU632_RS19835 0.17 -0.4 3,769,732 + rcsF LU632_RS19835 0.17 +0.3 3,769,784 - rcsF LU632_RS19835 0.30 +1.1 3,769,921 + rcsF LU632_RS19835 0.63 -0.0 3,769,958 - rcsF LU632_RS19835 0.73 +0.7 3,769,958 - rcsF LU632_RS19835 0.73 +0.5 3,769,995 + rcsF LU632_RS19835 0.82 +0.6 3,769,996 - rcsF LU632_RS19835 0.82 +1.0 3,770,148 + tsaA LU632_RS19840 0.12 -0.4 3,770,177 + tsaA LU632_RS19840 0.16 +0.9 3,770,177 + tsaA LU632_RS19840 0.16 +0.6 3,770,188 + tsaA LU632_RS19840 0.17 +0.2 3,770,188 + tsaA LU632_RS19840 0.17 -0.5 3,770,232 + tsaA LU632_RS19840 0.24 -0.1 3,770,232 + tsaA LU632_RS19840 0.24 -0.1 3,770,232 + tsaA LU632_RS19840 0.24 -0.2 3,770,232 + tsaA LU632_RS19840 0.24 -0.5 3,770,232 + tsaA LU632_RS19840 0.24 -0.7 3,770,232 + tsaA LU632_RS19840 0.24 -0.7 3,770,232 + tsaA LU632_RS19840 0.24 +0.2 3,770,232 + tsaA LU632_RS19840 0.24 +1.5 3,770,233 - tsaA LU632_RS19840 0.24 +0.1 3,770,233 - tsaA LU632_RS19840 0.24 -0.5 3,770,233 - tsaA LU632_RS19840 0.24 -1.4 3,770,233 - tsaA LU632_RS19840 0.24 +0.5 3,770,233 - tsaA LU632_RS19840 0.24 -0.4 3,770,234 + tsaA LU632_RS19840 0.24 -0.1 3,770,234 + tsaA LU632_RS19840 0.24 -0.8 3,770,234 + tsaA LU632_RS19840 0.24 -0.5 3,770,234 + tsaA LU632_RS19840 0.24 -1.6 3,770,234 + tsaA LU632_RS19840 0.24 -0.3 3,770,234 + tsaA LU632_RS19840 0.24 -1.1 3,770,234 + tsaA LU632_RS19840 0.24 +0.5 3,770,235 - tsaA LU632_RS19840 0.24 +0.5 3,770,235 - tsaA LU632_RS19840 0.24 +0.4 3,770,235 - tsaA LU632_RS19840 0.24 +0.5 3,770,235 - tsaA LU632_RS19840 0.24 +0.2 3,770,235 - tsaA LU632_RS19840 0.24 -0.6 3,770,235 - tsaA LU632_RS19840 0.24 -0.5 3,770,235 - tsaA LU632_RS19840 0.24 -0.9 3,770,235 - tsaA LU632_RS19840 0.24 -0.5 3,770,263 - tsaA LU632_RS19840 0.28 -1.6 3,770,322 - tsaA LU632_RS19840 0.36 +0.0 3,770,469 + tsaA LU632_RS19840 0.57 -0.7 3,770,476 + tsaA LU632_RS19840 0.58 +0.0 3,770,535 + tsaA LU632_RS19840 0.66 -1.4 3,770,535 + tsaA LU632_RS19840 0.66 +0.5 3,770,535 + tsaA LU632_RS19840 0.66 +0.2 3,770,535 + tsaA LU632_RS19840 0.66 +0.4 3,770,535 + tsaA LU632_RS19840 0.66 -0.1 3,770,536 - tsaA LU632_RS19840 0.67 +0.3 3,770,536 - tsaA LU632_RS19840 0.67 -0.2 3,770,536 - tsaA LU632_RS19840 0.67 +0.0 3,770,536 - tsaA LU632_RS19840 0.67 -0.5 3,770,623 - tsaA LU632_RS19840 0.79 -0.1 3,770,659 + tsaA LU632_RS19840 0.84 -0.4 3,770,812 + -0.6 3,770,812 + -0.1
Or see this region's nucleotide sequence