Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt panE and yajL overlap by 41 nucleotides yajL and LU632_RS18465 are separated by 107 nucleotides LU632_RS18465 and LU632_RS18470 are separated by 203 nucleotides
LU632_RS18455: panE - 2-dehydropantoate 2-reductase, at 3,487,758 to 3,488,678
panE
LU632_RS18460: yajL - protein deglycase YajL, at 3,488,638 to 3,489,228
yajL
LU632_RS18465: LU632_RS18465 - IS256 family transposase, at 3,489,336 to 3,490,544
_RS18465
LU632_RS18470: LU632_RS18470 - IS4 family transposase, at 3,490,748 to 3,491,873
_RS18470
Position (kb) 3489
3490
3491 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3488.440 kb on + strand, within panE at 3488.441 kb on - strand, within panE at 3488.445 kb on + strand, within panE at 3488.445 kb on + strand, within panE at 3488.533 kb on - strand, within panE at 3488.533 kb on - strand, within panE at 3488.534 kb on + strand, within panE at 3488.534 kb on + strand, within panE at 3488.535 kb on - strand, within panE at 3488.544 kb on + strand, within panE at 3488.612 kb on + strand at 3488.708 kb on + strand, within yajL at 3488.708 kb on + strand, within yajL at 3489.003 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.036 kb on + strand, within yajL at 3489.141 kb on + strand, within yajL at 3489.141 kb on + strand, within yajL at 3489.142 kb on - strand, within yajL at 3489.142 kb on - strand, within yajL at 3489.142 kb on - strand, within yajL at 3489.159 kb on + strand, within yajL at 3489.226 kb on + strand at 3489.227 kb on - strand at 3489.273 kb on - strand at 3490.672 kb on + strand at 3490.702 kb on - strand at 3490.858 kb on - strand at 3490.858 kb on - strand at 3490.858 kb on - strand at 3490.908 kb on + strand, within LU632_RS18470 at 3490.935 kb on + strand, within LU632_RS18470 at 3491.058 kb on - strand, within LU632_RS18470 at 3491.190 kb on + strand, within LU632_RS18470 at 3491.190 kb on + strand, within LU632_RS18470 at 3491.190 kb on + strand, within LU632_RS18470 at 3491.190 kb on + strand, within LU632_RS18470 at 3491.190 kb on + strand, within LU632_RS18470 at 3491.191 kb on - strand, within LU632_RS18470 at 3491.343 kb on - strand, within LU632_RS18470 at 3491.343 kb on - strand, within LU632_RS18470 at 3491.374 kb on + strand, within LU632_RS18470
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 3,488,440 + panE LU632_RS18455 0.74 -0.8 3,488,441 - panE LU632_RS18455 0.74 +0.7 3,488,445 + panE LU632_RS18455 0.75 -0.6 3,488,445 + panE LU632_RS18455 0.75 -0.8 3,488,533 - panE LU632_RS18455 0.84 +0.2 3,488,533 - panE LU632_RS18455 0.84 -1.8 3,488,534 + panE LU632_RS18455 0.84 -1.6 3,488,534 + panE LU632_RS18455 0.84 -1.1 3,488,535 - panE LU632_RS18455 0.84 +0.6 3,488,544 + panE LU632_RS18455 0.85 -0.3 3,488,612 + -0.6 3,488,708 + yajL LU632_RS18460 0.12 -2.0 3,488,708 + yajL LU632_RS18460 0.12 -0.0 3,489,003 + yajL LU632_RS18460 0.62 +0.3 3,489,006 + yajL LU632_RS18460 0.62 +0.1 3,489,006 + yajL LU632_RS18460 0.62 +0.1 3,489,006 + yajL LU632_RS18460 0.62 -0.7 3,489,006 + yajL LU632_RS18460 0.62 -0.1 3,489,036 + yajL LU632_RS18460 0.67 -0.9 3,489,141 + yajL LU632_RS18460 0.85 +0.2 3,489,141 + yajL LU632_RS18460 0.85 -0.4 3,489,142 - yajL LU632_RS18460 0.85 +0.2 3,489,142 - yajL LU632_RS18460 0.85 -0.3 3,489,142 - yajL LU632_RS18460 0.85 -0.1 3,489,159 + yajL LU632_RS18460 0.88 -0.0 3,489,226 + -0.4 3,489,227 - +0.5 3,489,273 - +2.7 3,490,672 + +1.2 3,490,702 - +0.4 3,490,858 - +0.7 3,490,858 - -0.2 3,490,858 - +0.6 3,490,908 + LU632_RS18470 0.14 +0.5 3,490,935 + LU632_RS18470 0.17 -0.1 3,491,058 - LU632_RS18470 0.28 -0.5 3,491,190 + LU632_RS18470 0.39 -0.2 3,491,190 + LU632_RS18470 0.39 +0.5 3,491,190 + LU632_RS18470 0.39 -0.8 3,491,190 + LU632_RS18470 0.39 -0.3 3,491,190 + LU632_RS18470 0.39 -0.2 3,491,191 - LU632_RS18470 0.39 -0.0 3,491,343 - LU632_RS18470 0.53 -0.2 3,491,343 - LU632_RS18470 0.53 -0.2 3,491,374 + LU632_RS18470 0.56 -0.2
Or see this region's nucleotide sequence