Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS10240 and LU632_RS10245 are separated by 45 nucleotides LU632_RS10245 and LU632_RS10250 are separated by 535 nucleotides LU632_RS10250 and LU632_RS10255 are separated by 6 nucleotides LU632_RS10255 and LU632_RS10260 are separated by 70 nucleotides LU632_RS10260 and mdoC are separated by 3 nucleotides
LU632_RS10240: LU632_RS10240 - hypothetical protein, at 1,957,958 to 1,958,125
_RS10240
LU632_RS10245: LU632_RS10245 - hypothetical protein, at 1,958,171 to 1,958,338
_RS10245
LU632_RS10250: LU632_RS10250 - phospholipase D family protein, at 1,958,874 to 1,959,059
_RS10250
LU632_RS10255: LU632_RS10255 - transposase, at 1,959,066 to 1,959,347
_RS10255
LU632_RS10260: LU632_RS10260 - hypothetical protein, at 1,959,418 to 1,959,576
_RS10260
LU632_RS10265: mdoC - glucans biosynthesis protein MdoC, at 1,959,580 to 1,960,704
mdoC
Position (kb) 1959
1960 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1958.146 kb on - strand at 1958.233 kb on + strand, within LU632_RS10245 at 1958.233 kb on + strand, within LU632_RS10245 at 1958.278 kb on + strand, within LU632_RS10245 at 1958.279 kb on - strand, within LU632_RS10245 at 1958.279 kb on - strand, within LU632_RS10245 at 1958.294 kb on - strand, within LU632_RS10245 at 1958.367 kb on + strand at 1958.367 kb on + strand at 1958.372 kb on - strand at 1958.379 kb on - strand at 1958.390 kb on + strand at 1958.441 kb on - strand at 1958.441 kb on - strand at 1958.466 kb on - strand at 1958.492 kb on - strand at 1958.492 kb on - strand at 1958.494 kb on + strand at 1958.495 kb on - strand at 1958.495 kb on - strand at 1958.495 kb on - strand at 1958.553 kb on + strand at 1958.567 kb on - strand at 1958.572 kb on - strand at 1958.582 kb on + strand at 1958.582 kb on + strand at 1958.586 kb on + strand at 1958.587 kb on - strand at 1958.587 kb on - strand at 1958.707 kb on + strand at 1958.733 kb on + strand at 1958.803 kb on + strand at 1958.804 kb on - strand at 1958.804 kb on - strand at 1958.834 kb on + strand at 1958.834 kb on + strand at 1958.941 kb on - strand, within LU632_RS10250 at 1959.160 kb on - strand, within LU632_RS10255 at 1959.380 kb on + strand at 1959.409 kb on - strand at 1959.438 kb on + strand, within LU632_RS10260 at 1959.594 kb on + strand at 1959.617 kb on - strand at 1959.622 kb on + strand at 1959.623 kb on - strand at 1959.716 kb on - strand, within mdoC at 1959.761 kb on + strand, within mdoC at 1959.762 kb on - strand, within mdoC at 1959.766 kb on - strand, within mdoC at 1959.987 kb on + strand, within mdoC at 1959.987 kb on + strand, within mdoC at 1959.988 kb on - strand, within mdoC at 1960.010 kb on + strand, within mdoC at 1960.054 kb on + strand, within mdoC at 1960.074 kb on - strand, within mdoC at 1960.074 kb on - strand, within mdoC at 1960.074 kb on - strand, within mdoC at 1960.108 kb on - strand, within mdoC at 1960.111 kb on + strand, within mdoC at 1960.111 kb on + strand, within mdoC at 1960.151 kb on + strand, within mdoC at 1960.178 kb on - strand, within mdoC at 1960.199 kb on + strand, within mdoC at 1960.199 kb on + strand, within mdoC at 1960.308 kb on + strand, within mdoC at 1960.309 kb on - strand, within mdoC at 1960.318 kb on + strand, within mdoC
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,958,146 - +0.4 1,958,233 + LU632_RS10245 0.37 -0.7 1,958,233 + LU632_RS10245 0.37 -0.6 1,958,278 + LU632_RS10245 0.64 -1.7 1,958,279 - LU632_RS10245 0.64 -0.3 1,958,279 - LU632_RS10245 0.64 -0.1 1,958,294 - LU632_RS10245 0.73 +0.1 1,958,367 + +0.0 1,958,367 + +0.4 1,958,372 - -0.0 1,958,379 - +0.6 1,958,390 + -0.5 1,958,441 - -0.5 1,958,441 - -0.2 1,958,466 - -0.0 1,958,492 - -3.1 1,958,492 - +0.3 1,958,494 + +1.6 1,958,495 - -0.0 1,958,495 - -1.4 1,958,495 - -0.9 1,958,553 + -0.4 1,958,567 - +0.2 1,958,572 - +0.6 1,958,582 + -0.0 1,958,582 + +1.0 1,958,586 + +1.0 1,958,587 - -0.6 1,958,587 - -0.6 1,958,707 + +1.0 1,958,733 + -0.1 1,958,803 + -1.6 1,958,804 - +0.2 1,958,804 - +0.6 1,958,834 + -0.0 1,958,834 + -0.3 1,958,941 - LU632_RS10250 0.36 +0.1 1,959,160 - LU632_RS10255 0.33 -1.0 1,959,380 + -0.8 1,959,409 - -0.4 1,959,438 + LU632_RS10260 0.13 -0.0 1,959,594 + +0.3 1,959,617 - +1.6 1,959,622 + +0.1 1,959,623 - +0.5 1,959,716 - mdoC LU632_RS10265 0.12 -0.8 1,959,761 + mdoC LU632_RS10265 0.16 -0.2 1,959,762 - mdoC LU632_RS10265 0.16 +0.6 1,959,766 - mdoC LU632_RS10265 0.17 -0.2 1,959,987 + mdoC LU632_RS10265 0.36 +0.2 1,959,987 + mdoC LU632_RS10265 0.36 -0.3 1,959,988 - mdoC LU632_RS10265 0.36 -0.4 1,960,010 + mdoC LU632_RS10265 0.38 -0.2 1,960,054 + mdoC LU632_RS10265 0.42 -1.0 1,960,074 - mdoC LU632_RS10265 0.44 +1.3 1,960,074 - mdoC LU632_RS10265 0.44 -0.1 1,960,074 - mdoC LU632_RS10265 0.44 -0.4 1,960,108 - mdoC LU632_RS10265 0.47 -0.4 1,960,111 + mdoC LU632_RS10265 0.47 -0.6 1,960,111 + mdoC LU632_RS10265 0.47 -0.5 1,960,151 + mdoC LU632_RS10265 0.51 +1.0 1,960,178 - mdoC LU632_RS10265 0.53 -0.4 1,960,199 + mdoC LU632_RS10265 0.55 -0.4 1,960,199 + mdoC LU632_RS10265 0.55 -2.0 1,960,308 + mdoC LU632_RS10265 0.65 +0.4 1,960,309 - mdoC LU632_RS10265 0.65 -0.8 1,960,318 + mdoC LU632_RS10265 0.66 +0.1
Or see this region's nucleotide sequence