Experiment: HBM-CucXylem
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gsiB and gsiC are separated by 62 nucleotides gsiC and gsiD are separated by 9 nucleotides gsiD and LU632_RS09575 are separated by 4 nucleotides LU632_RS09575 and rimO are separated by 168 nucleotides
LU632_RS09560: gsiB - glutathione ABC transporter substrate-binding protein GsiB, at 1,810,102 to 1,811,634
gsiB
LU632_RS09565: gsiC - glutathione ABC transporter permease GsiC, at 1,811,697 to 1,812,617
gsiC
LU632_RS09570: gsiD - glutathione ABC transporter permease GsiD, at 1,812,627 to 1,813,532
gsiD
LU632_RS09575: LU632_RS09575 - DUF4385 domain-containing protein, at 1,813,537 to 1,813,982
_RS09575
LU632_RS09580: rimO - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,814,151 to 1,815,479
rimO
Position (kb) 1812
1813
1814 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1811.703 kb on - strand at 1811.707 kb on - strand at 1811.712 kb on - strand at 1812.213 kb on + strand, within gsiC at 1812.214 kb on - strand, within gsiC at 1812.215 kb on + strand, within gsiC at 1812.216 kb on - strand, within gsiC at 1812.216 kb on - strand, within gsiC at 1812.216 kb on - strand, within gsiC at 1812.306 kb on + strand, within gsiC at 1812.307 kb on - strand, within gsiC at 1812.307 kb on - strand, within gsiC at 1812.307 kb on - strand, within gsiC at 1812.307 kb on - strand, within gsiC at 1812.308 kb on + strand, within gsiC at 1812.309 kb on - strand, within gsiC at 1812.309 kb on - strand, within gsiC at 1812.452 kb on - strand, within gsiC at 1812.455 kb on + strand, within gsiC at 1812.455 kb on + strand, within gsiC at 1812.455 kb on + strand, within gsiC at 1812.456 kb on - strand, within gsiC at 1812.456 kb on - strand, within gsiC at 1812.530 kb on - strand at 1812.552 kb on - strand at 1812.576 kb on - strand at 1812.582 kb on + strand at 1812.583 kb on - strand at 1812.644 kb on + strand at 1812.663 kb on - strand at 1812.897 kb on - strand, within gsiD at 1812.910 kb on + strand, within gsiD at 1812.910 kb on + strand, within gsiD at 1812.910 kb on + strand, within gsiD at 1812.911 kb on - strand, within gsiD at 1813.006 kb on - strand, within gsiD at 1813.006 kb on - strand, within gsiD at 1813.028 kb on + strand, within gsiD at 1813.032 kb on - strand, within gsiD at 1813.116 kb on - strand, within gsiD at 1813.199 kb on + strand, within gsiD at 1813.199 kb on + strand, within gsiD at 1813.200 kb on - strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.204 kb on - strand, within gsiD at 1813.204 kb on - strand, within gsiD at 1813.205 kb on + strand, within gsiD at 1813.319 kb on + strand, within gsiD at 1813.322 kb on + strand, within gsiD at 1813.479 kb on - strand at 1813.647 kb on + strand, within LU632_RS09575 at 1813.648 kb on - strand, within LU632_RS09575 at 1813.648 kb on - strand, within LU632_RS09575 at 1813.782 kb on + strand, within LU632_RS09575 at 1813.812 kb on + strand, within LU632_RS09575 at 1813.840 kb on - strand, within LU632_RS09575 at 1814.048 kb on + strand at 1814.049 kb on - strand at 1814.112 kb on + strand at 1814.208 kb on + strand at 1814.369 kb on + strand, within rimO at 1814.470 kb on + strand, within rimO at 1814.470 kb on + strand, within rimO
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-CucXylem remove 1,811,703 - +0.2 1,811,707 - +0.6 1,811,712 - +0.9 1,812,213 + gsiC LU632_RS09565 0.56 -0.4 1,812,214 - gsiC LU632_RS09565 0.56 +1.8 1,812,215 + gsiC LU632_RS09565 0.56 +1.5 1,812,216 - gsiC LU632_RS09565 0.56 -0.2 1,812,216 - gsiC LU632_RS09565 0.56 +0.7 1,812,216 - gsiC LU632_RS09565 0.56 +0.2 1,812,306 + gsiC LU632_RS09565 0.66 +1.7 1,812,307 - gsiC LU632_RS09565 0.66 +0.7 1,812,307 - gsiC LU632_RS09565 0.66 -0.2 1,812,307 - gsiC LU632_RS09565 0.66 +0.2 1,812,307 - gsiC LU632_RS09565 0.66 +0.7 1,812,308 + gsiC LU632_RS09565 0.66 -0.0 1,812,309 - gsiC LU632_RS09565 0.66 +0.4 1,812,309 - gsiC LU632_RS09565 0.66 +0.0 1,812,452 - gsiC LU632_RS09565 0.82 +0.4 1,812,455 + gsiC LU632_RS09565 0.82 +0.3 1,812,455 + gsiC LU632_RS09565 0.82 +0.5 1,812,455 + gsiC LU632_RS09565 0.82 +0.9 1,812,456 - gsiC LU632_RS09565 0.82 +0.4 1,812,456 - gsiC LU632_RS09565 0.82 +0.9 1,812,530 - +0.5 1,812,552 - +0.2 1,812,576 - +0.4 1,812,582 + -1.0 1,812,583 - +0.0 1,812,644 + +0.2 1,812,663 - +0.6 1,812,897 - gsiD LU632_RS09570 0.30 +0.6 1,812,910 + gsiD LU632_RS09570 0.31 -0.2 1,812,910 + gsiD LU632_RS09570 0.31 -0.4 1,812,910 + gsiD LU632_RS09570 0.31 -1.3 1,812,911 - gsiD LU632_RS09570 0.31 +0.3 1,813,006 - gsiD LU632_RS09570 0.42 +0.3 1,813,006 - gsiD LU632_RS09570 0.42 -0.1 1,813,028 + gsiD LU632_RS09570 0.44 +0.7 1,813,032 - gsiD LU632_RS09570 0.45 +0.7 1,813,116 - gsiD LU632_RS09570 0.54 +0.9 1,813,199 + gsiD LU632_RS09570 0.63 +0.4 1,813,199 + gsiD LU632_RS09570 0.63 +0.2 1,813,200 - gsiD LU632_RS09570 0.63 +1.5 1,813,203 + gsiD LU632_RS09570 0.64 +0.1 1,813,203 + gsiD LU632_RS09570 0.64 +0.8 1,813,203 + gsiD LU632_RS09570 0.64 -0.2 1,813,203 + gsiD LU632_RS09570 0.64 +0.9 1,813,203 + gsiD LU632_RS09570 0.64 -2.2 1,813,203 + gsiD LU632_RS09570 0.64 +0.6 1,813,204 - gsiD LU632_RS09570 0.64 -0.3 1,813,204 - gsiD LU632_RS09570 0.64 +0.8 1,813,205 + gsiD LU632_RS09570 0.64 -1.8 1,813,319 + gsiD LU632_RS09570 0.76 +0.6 1,813,322 + gsiD LU632_RS09570 0.77 -0.6 1,813,479 - +2.0 1,813,647 + LU632_RS09575 0.25 +1.1 1,813,648 - LU632_RS09575 0.25 +1.6 1,813,648 - LU632_RS09575 0.25 +0.1 1,813,782 + LU632_RS09575 0.55 +0.0 1,813,812 + LU632_RS09575 0.62 -0.5 1,813,840 - LU632_RS09575 0.68 -0.0 1,814,048 + +0.0 1,814,049 - +0.8 1,814,112 + -0.3 1,814,208 + -1.8 1,814,369 + rimO LU632_RS09580 0.16 +0.4 1,814,470 + rimO LU632_RS09580 0.24 +0.3 1,814,470 + rimO LU632_RS09580 0.24 -0.9
Or see this region's nucleotide sequence